Protein Info for mRNA_111 in Rhodosporidium toruloides IFO0880

Name: 8479
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 665 transmembrane" amino acids 87 to 111 (25 residues), see Phobius details amino acids 123 to 142 (20 residues), see Phobius details amino acids 153 to 177 (25 residues), see Phobius details amino acids 183 to 200 (18 residues), see Phobius details amino acids 212 to 233 (22 residues), see Phobius details amino acids 240 to 262 (23 residues), see Phobius details amino acids 273 to 298 (26 residues), see Phobius details amino acids 307 to 327 (21 residues), see Phobius details amino acids 348 to 367 (20 residues), see Phobius details amino acids 381 to 404 (24 residues), see Phobius details amino acids 413 to 431 (19 residues), see Phobius details amino acids 441 to 460 (20 residues), see Phobius details amino acids 478 to 498 (21 residues), see Phobius details amino acids 548 to 567 (20 residues), see Phobius details PF07690: MFS_1" amino acids 92 to 489 (398 residues), 156.1 bits, see alignment E=1.9e-49 PF06609: TRI12" amino acids 106 to 344 (239 residues), 40.7 bits, see alignment E=1.8e-14 PF00083: Sugar_tr" amino acids 106 to 261 (156 residues), 45 bits, see alignment E=1.2e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (665 amino acids)

>mRNA_111 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MPLQRALSAQAGTLDAAAPVLNPRTESDIDVQLAQQNLANLAPAHSLDPARTGSSETVVA
EENGASSAPSATKPVDQQVIPKNNMPIVMFCLALTTFLAALDQTIVATALSTISKDLNGT
TGSLSWVSAAYLLCVTSLAPCYGKLSDYFGRKIVFFSSIVVFIIGSALCGAAQDIVWLCV
CRGVQGVGGGGVMQMTQVVVSDITTLQSRSKYTGIIGATWGFAAVVGPLLGGVLTSKASW
RWCFFLNLPVASLALVLLFFFLNLNPHTPPKFAYLLSTFDFLGLFLLVAGLVVLLVGFTS
GETSWSSAQTIACLVVGVCTLLAAVGVELKTKRSPIIPPRLFRIRTSAALLIGVFFQAFG
FIPLSYYEPLYFQALGSSPLMSGVLMMPFSVGTALFGVAYGFLVAKLKRTKELIILSYFI
STLGFALVCTLDESSSRAKQMLYLLVAALGIGPLFQLPMLHIQASMPVKDMATSTATLAL
MRSVGGTVGISVSGAIYASQLKTRLGGIQGYSGMESGAAVGAVQGLVDIQPPELRRQVLN
AYARSLNFPWIICTPLLFVGFLISFLLKHYSMERAAVKAPRKGEVGGTVSLASGVTNDER
NEDSVCKATKTGRWRSYNWSSDGETRMEREAGETEKDERRICGSKATKEEQYRQKTSLYN
EGCWL