Protein Info for mRNA_117 in Rhodosporidium toruloides IFO0880

Name: 8485
Annotation: K14815 MRT4 mRNA turnover protein 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 PF00466: Ribosomal_L10" amino acids 19 to 120 (102 residues), 67.7 bits, see alignment E=8.4e-23 PF17777: RL10P_insert" amino acids 125 to 198 (74 residues), 64.6 bits, see alignment E=6.9e-22

Best Hits

Swiss-Prot: 48% identical to MRT4_MOUSE: mRNA turnover protein 4 homolog (Mrto4) from Mus musculus

KEGG orthology group: K14815, mRNA turnover protein 4 (inferred from 51% identity to ppl:POSPLDRAFT_119924)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (229 amino acids)

>mRNA_117 K14815 MRT4 mRNA turnover protein 4 (Rhodosporidium toruloides IFO0880)
MPRSKRDRVVPLTQTAKKGKEAKGRLIEEVREQAEAFKYLWVFEVEHMRNNLLQEVRTAW
KGSRIFLGRNAVMRKGLGATPEDECRLGVHKIANMLEGNRGLLFTDESPEVVTEWFESFK
KQDFARTGNTVDEGFELPAGPILINDEPAPHSLEPQFRKLGMSTSLLKGVPTLNAPHVVC
KPGDTLNPNQVNLLKLFGKTFATFQIVPLLGVHLVDGTTCGGTSMEDAE