Protein Info for mRNA_128 in Rhodosporidium toruloides IFO0880

Name: 8496
Annotation: K11592 DICER1, DCR1 endoribonuclease Dicer

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1404 transmembrane" amino acids 1149 to 1166 (18 residues), see Phobius details PF04851: ResIII" amino acids 9 to 176 (168 residues), 39.6 bits, see alignment E=2.1e-13 PF00270: DEAD" amino acids 10 to 180 (171 residues), 73.6 bits, see alignment E=6.4e-24 PF00271: Helicase_C" amino acids 304 to 433 (130 residues), 61.2 bits, see alignment E=4.1e-20 PF03368: Dicer_dimer" amino acids 500 to 598 (99 residues), 62.3 bits, see alignment 1.4e-20 PF00636: Ribonuclease_3" amino acids 935 to 1038 (104 residues), 39.7 bits, see alignment 2.2e-13 amino acids 1118 to 1232 (115 residues), 64 bits, see alignment E=6.4e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1404 amino acids)

>mRNA_128 K11592 DICER1, DCR1 endoribonuclease Dicer (Rhodosporidium toruloides IFO0880)
MAAEALVPRAYQEDITREALERNVVVRADTGSGKTFIAVLLIRAIAAQPRQTDNHTLIVF
LTPTVTLVHQQASVLESATTLRVKSFVGAIGVDFWKTERWREELSTTDIAVLTPQVWLNT
LSAGYFDLRNVSLMVFDEAHHAQKRHPSAEILRQHYHPLKQRGERVPKILSLTASPIWNV
KQPWKAVAELESNLDARILEISSNHQAELAAHTPRAQEQLVTHSPAMSDDAADAAFARLL
HDVPSLPNAEQAGRFQERLIAAYRLFGIAGARTLLHEAAPATAPASDSPAILSSTSDQLS
PKVKALVASLEPYSRDPNVHIIVFVEQRHHASILIELIKRIDSLRDWIRPAALVGHGREG
WGRGSGPDLAELGMAIKEQQAIVAAFRAGEYNLVVATRVAEEGLDFQKVNVVVRFDALTT
ITGYVQSRGRARASDARYIVIAEEGSPEAAKYKEYVSQESALRDMYERRDELPDDPLEPE
LDNLPTYSTVKGALLTHQSAIPTLAEFFQLLRYDIWSTVVKPEFALSAAGPPWIATLTVP
KTAALDRTVFTAALDRTVFVSDPMPTKKAAKQRAAFEVCLALHRAGALDDHLLPIREKAG
KGSKDADGREVNVEPIPAHLDLELPNYFGNVWTSKQAFVHVVEIALPGIDQPYRLALVSE
RVLPAIGLLSLFDREGTPFTVKSVATSSHDWPSDDERDERLAQLEAFNRTCTRIVLNRRI
EDDVRFFALWAPVDTAGRIDWTALDHAFSPLDIEKIKPGDLVVVPLRRPTARIGRYLSVR
TDVDSASPTPEIEPDSPTSKRKLIARYPDYHVYLKVAYDYHGIQEGVPEPVVRYEPLDVR
PHNALVPPEQRLEPPLKPYVHNRNFPISMIQQTTLPLALFSAFSLVPSLNRSFLENAAAV
DTVRRFFDLPAIPPSTLVQALTAPSCCRGFDYQLLETLGDSALKVATSIHIYLEYPRGDE
NRLARLRENSVGNLFLRRRALDSGYATSIIPYTLRSSTFVPETSDDADMSADGLSIKKRL
SRRLLSDVVEATLGAAALVSFDTAMQVGDRLGLCFGGTTPWSDRLSGKSVLANSSQAAGP
ALRKIEEAFGYRFERQGHLLKQALTHRSFVDQSASFYEREEYLGDSLLDWWTTLRLYQLS
PNSTPGKLSYVRSMLVSNGVLALLAVKKLDLHKMILHSSPPLETALAEAAEQGKRFEYAD
VPTGALTWLWDPPKVLGDVLESLLAVVFIDCGMQLDPVLGVLDRLYADIMPHVKESDSRD
PYSRVTNLTDAASAIAKSPYTSAHTLIQPTYTALVTFHGEILASQTSASKAVSRQLAAKA
ALEVLAAEEGARCDCVKEKGKRVMEAEEAETPEEASDGGASGEPPNNPALLAFDEAVKED
EQEQADAAEAQGGEADSLIRVREY