Protein Info for mRNA_139 in Rhodosporidium toruloides IFO0880

Name: 8507
Annotation: K14538 NUG1, GNL3 nuclear GTP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 727 PF08701: GN3L_Grn1" amino acids 15 to 87 (73 residues), 72.6 bits, see alignment E=3.5e-24 PF02421: FeoB_N" amino acids 274 to 327 (54 residues), 28.7 bits, see alignment 1.3e-10 PF01926: MMR_HSR1" amino acids 275 to 334 (60 residues), 52 bits, see alignment 1.1e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (727 amino acids)

>mRNA_139 K14538 NUG1, GNL3 nuclear GTP-binding protein (Rhodosporidium toruloides IFO0880)
MVKIRKKTSKRTTTRMREKVKHKVSEAHKKQKKHAKNDPTWKSKKPKELGIPNSFPYKDQ
VIAEQQAEKARVEAEKAARRDAAIAANKQGSTLASTAALAAALAADSAAREDALALGESM
DEDDEEAQVQDASLKLHAKSLRKVLEMSDVVIEVLDARDPVGTRCRAVERELKAMDGGRK
KLVLVLNKIDLVPPAVVQAWLSHLRLQAPTIPFKSSTQQQRSHLSASSSSTPQSASGSST
KPLMELIKGFRLNHSAASSGEGSSSSAPVKHSLTIGLVGHPNVGKSSLINTLKRSKACSV
APTPGWTKEVQEVVIEKGVRVLDCPGVVVEMRGEVEGALKGMIKAEAVSDPKAPIEAILA
RCSSTHLQMLYSIPYFNDTTSFLLAVARAKGRLRKGGVPDLDGTARSVLRDWVAGRIAYY
TAPPTKDQTERLKAATSAEAEQVGTVSETDVGSATLHTTFAPAFDLDALFGEADKVAFGE
DGAGSSVGEMKAVKMKEWALGVESEDADIGWIVEDKLEEEEAMDADDDGLNLDDLVDDEE
FGGLDEDDTMEAEDEQPAAAPAPVLPKGKRAAPSSTSNIVSVAPPAKKKKAVKSVSFSST
PLGPTGSTSAPAPSAAAANTKLFTSVEAEGDVSLNKKNKRQAKKDKKRAAKQTAKMDAEV
GAATREFGEDAELPSKPREAQTVKAGGQVGGAYDFAEFFAVGGKGAAAAGGKKRNGAQHD
DDDEEMS