Protein Info for mRNA_143 in Rhodosporidium toruloides IFO0880

Name: 8511
Annotation: KOG4136 Predicted mitochondrial cholesterol transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 494 transmembrane" amino acids 6 to 31 (26 residues), see Phobius details amino acids 51 to 81 (31 residues), see Phobius details amino acids 92 to 112 (21 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details PF04148: Erv26" amino acids 3 to 233 (231 residues), 208.7 bits, see alignment E=4.5e-66

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (494 amino acids)

>mRNA_143 KOG4136 Predicted mitochondrial cholesterol transporter (Rhodosporidium toruloides IFO0880)
MVLVLHLVSYIAGLAGFCFALLSLANGLLYVAEVIEEHSAFAKTVGQRIIYAEIVLFGLL
YAVDGLPLHLVAVGVVAHLIYLQNFSRHWPVISVKSLTFVLSCLIVLLSHYLSFRHFSSR
SLAAASHHSYPRYDPRKGRYASQGAQTESFLEVATYFGVCVWLVPFYLFLSLSANDNVLP
SSGEGSTSSSRRASAAPSSPSLSVPSHPSRTPDSPTLGRHARHRSSMMKSALSSCFSIIP
SSLRPSTLSHSLPLNTGGAGPRMDVPRSPSPTFGFQPYANGGGGGSVEAREAYASSPSGT
AAATKGRPHLSLVGRQGSNDRLLPGAGVSMSPTSSYHPAFPPSPSSPHLSHPLSTSLPPS
LSLHAPSPSPRPGSGSALPPSLSPSNPRFPIPSPSPQSPSVPPSAGGRAGSQPPSPAQAR
FTRPLPAQGGPPPGMVRRHTAQLVQQHSASPPPPPPPSQQGQGAGLGRRSSEAQGLRGRF
VGAGGAGGEQGGGG