Protein Info for mRNA_144 in Rhodosporidium toruloides IFO0880

Name: 8512
Annotation: K00698 CHS1 chitin synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2063 transmembrane" amino acids 1039 to 1059 (21 residues), see Phobius details amino acids 1075 to 1096 (22 residues), see Phobius details amino acids 1339 to 1361 (23 residues), see Phobius details amino acids 1709 to 1724 (16 residues), see Phobius details amino acids 1726 to 1754 (29 residues), see Phobius details amino acids 1760 to 1781 (22 residues), see Phobius details amino acids 1787 to 1811 (25 residues), see Phobius details PF00063: Myosin_head" amino acids 33 to 395 (363 residues), 199 bits, see alignment E=3.8e-62 PF00173: Cyt-b5" amino acids 1110 to 1173 (64 residues), 32.6 bits, see alignment (E = 2.2e-11) PF03142: Chitin_synth_2" amino acids 1350 to 1855 (506 residues), 794.7 bits, see alignment E=1.2e-242 PF13641: Glyco_tranf_2_3" amino acids 1521 to 1701 (181 residues), 38.1 bits, see alignment E=4.9e-13 PF13632: Glyco_trans_2_3" amino acids 1539 to 1772 (234 residues), 43.3 bits, see alignment E=1.3e-14 PF08766: DEK_C" amino acids 2007 to 2061 (55 residues), 48 bits, see alignment (E = 3e-16)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2063 amino acids)

>mRNA_144 K00698 CHS1 chitin synthase (Rhodosporidium toruloides IFO0880)
MAHTDSSTLTNLAHLACPPQTANVVAAAVPSPDSLTHALAQRYRLDLAATWCGDSTLVAL
NPLEVKADVSEASKAEYEQRVYAPRDRQRSGGDDVQPHAYNLACRVYFAMRRTGESQSIL
YSGLSGSGSSSQQQLVTAQLLRLSTSGKKDTRLAEQVQALQTLLTSFGCAKTQQNPSATR
FSSLLELNFSNAGKLAGAKVLAYGLDRTRFAKIGKDERTFHAFYQLVAGSTREEKDSYGI
LDDAGSYNLFAKSSTYRLPPGVPNSDDSIAFDELRAAFKVLGFKPRHVASILRTLSAILL
LGNLEFAEHPEDPYDFQSDPAWVTNRDVLERAASLLGVSSEDLERALTNRVRWVRKEVTA
TILRAEGADAQRDSLMAALYSILFAFVVETANHRLFPGDEAISALHNDGGSSIVQFSQPG
FTNHSSSRPGSRTSVLIQALNGFDDFLHNYQSELVRFWTLEHAFDGDLGVAARAQEDGVK
VVDVLPADDGTGRIELMRGGRVGGKADEKPGGILGGLAKTGAAMVRKGLGADEADDEFLR
GMRDHFASHPSFVSHPSGPGARTAFAIKHFGDQQVVYDAHHFVELDLDQLDPDHVALLRS
SFDSFVAKLVSGPSLAAEVHPLDENTVVAAQVSSMPLRRPSKVKVCEAFARGEEEGQEKD
YTEPLLDSLAIHPVSAQINATTAHLLGSILARTNLWNVISLLPNATMTPRQIDARLLKAQ
VSAFQLPQLAARRQSSDFLHDADLNDFLIRHGVGVSAHENAHDAVDAFLRDFGFASERGE
FAIGQQRVWLGWKAWKAVEDRVRQSEPVEHRQAAVEAVREGRVREAEEALEGRRGDEKEK
EELEEGEGGLQGYLPHFGPSRSTVNVGYTGGGPAAAAGGESVDDLLYSNGGTPQTPTTPD
YVPYSAGAGGLGSTNAFDTYRSGLSHYNQHDSFVGNPLQPPSAPYMRHGGGSYGSMGSLG
GAAGAGQHAPMASEIWGNDKQTPAGFGAHGGSLYGVHAAAGGGGGGGKGGEGVLDREGNP
QEGEGKAIEEVPTSRGRRVWVAIVWMLTFWVPTPCLTYLGRMKRPDVRMAWREKLALCML
IAFFCGIVIFYIIVFGKLLCPNYNKAWNTAELGYYSTASQFWVAVRGNVYDITKFYKVQH
SDIQGETVTSTDMLQLAGLDLTGYFPIPLTSACPSLVTDENLSLQSQNFTAEVPTAVHTS
GYLQPEKSSALSSASWYFDTFLPKMRDYHKGPLVWSKGKIQEQAEKNSRQWAIVNGSVYD
LTDYFYTANLLNDQKYFFLDKDLANLWTAQPGTDLTGPIKDLGMDWPTLQTNMACIQTLF
YLGETDFRESPRCKVQPNLLLAFSILIMVTILAKFLAALQFGSKRLPEQRDKFIICQVTC
YTEGEESLKKTIDSLATLNYDDKRKLILVICDGMIVGSGNDRPTPRIVLDILGVDQNIEP
DPLMYKAVAEGSKQLNYGKVWSGLYEVEGHVVPYLVVAKTGRPSERSRPGNRGKRDSQIL
AMRFLNRVHFDSEMYPLELEMYHQVKNVIGVDPQMYEFIFVVDADTSVHADSLNRLVAAC
ADDSQIIGICGETRLENEQVSWWTMIQVYEYFISHHMAKAFESLFGSVTCLPGCFSMYRL
RSADKGKPLVISSLIVDDYSDNNLDTLHKKNLLSLGEDRYLTTLILKHFPTYKTKFVQEA
KAMTVAPHSWSILLSQRRRWINSTVHNLAELLFLPNLCGALCFSMRWIVLIDLLGTVILP
ATLVYLVYLIVTIATGSGPLPVIALVMIAAVYGLQAFIFLIKRQWQYIGWLIIYLLAYPI
YSFLLPVYAFWRFDDFTWGSTRVVVGEGRAKKVLQAEDEAFDESTIPLAKFADYEAALAE
ETYDTRSEKSYSTAGFSLATRIPKPYHGHTASRSTMQLGALPQMPSQGFGFSAPGSVVGA
PAYTPGPGSVVGSDFGYPMSVNPYMQPATLQSQMSLAGYPQPPMSTLPRRQSGMSAFSYG
GVAPSVFSVNPFANPPAPPQPSDDPNPTDETLISTLQAYLASEDLMHLSKRKARDGLAAL
FPRADLTSRKDWINQQIDALLSA