Protein Info for mRNA_147 in Rhodosporidium toruloides IFO0880

Name: 8515
Annotation: K20120 BIN3 bridging integrator 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 967 transmembrane" amino acids 250 to 267 (18 residues), see Phobius details PF03114: BAR" amino acids 1 to 211 (211 residues), 125.2 bits, see alignment E=1.8e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (967 amino acids)

>mRNA_147 K20120 BIN3 bridging integrator 3 (Rhodosporidium toruloides IFO0880)
MSMKLGQVERTDDSAFRSESERFKQLQTNSNALQKEAKAYLDAVRNVSASSTRIGMTIDM
FFGSDSGEQAISANAYKRAVEELEGDIARTIDAPYRATVLEPIGKFCAHLPEVANAISKR
EKKLLDYDAARSKARKLGEKDDAIKLRAAEQEEEQAREIFQALDGQLREELPQLLDLRIP
YLDPSFECMVRLQAHFATDGYEKLGGVQRYFADGVRDEYASGALDAQVEGALQEMRELSI
CGLSAPSPASLALALLACSDLRLLCVLRESLRDARRMRARLPFLARLAVHPSSPSPATAA
PLCGPSRAASTSAAVLPSYVPPIQQQHTRKGPTSDARESALERALADNFLRSDAGLAGGG
SEAPRASSGPLQADKRVRRVPDGAGRRSDRPVPSSKEASAAASLAEARRPAGQAAGSTDK
KPTPRRRTRPTTPPEPVWPPSTSLHDALLQQCLPTSSDELLQFLRRVKTVYVHPDLEALA
DFHASDAIAHFVSTDSYRFLLKLAFDASNLRLARALLSEMEEKEVAMDEPTQRVVVQGYL
ARGELGPEDERRKQAAIRALRVNPSMAPQVFRRDLGEKGAGSGDPMERWKGWSITSRHRR
EMRELRELRAQQEEELRRGVEKEAVLRSPPHLRSRRERHATPLARPQARVPPRPPLIIPR
DAHRLDRYAVTALVHRLVREDRVSDGFALARSWLSANKPRLDSETSAAYSRTTSDPQTQT
RSDDTHSHVRQYLQHSTLYHKTSRILMNILLKALFAERSPRPVIRDFITNFLTTYSADPP
APDNLPEVSTLRLLVSGLRGATNAWVRAASYVDWFGYRWGMPKADPSDRAWYHVVPPSRE
SAVGLGLADKDGKPLGPFAKKPKDSRLLPLAPHRLVTPDVAILMLRHAVESAKKRNVGSA
TKRAINEWWHGLDKRGSEIWRTYEAKGLVYRAIKAGLIVEEEKVEGRAKKAAAAKASGGS
KKETKTP