Protein Info for mRNA_148 in Rhodosporidium toruloides IFO0880

Name: 8516
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 608 transmembrane" amino acids 65 to 83 (19 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details amino acids 135 to 152 (18 residues), see Phobius details amino acids 164 to 184 (21 residues), see Phobius details amino acids 194 to 212 (19 residues), see Phobius details amino acids 223 to 245 (23 residues), see Phobius details amino acids 280 to 305 (26 residues), see Phobius details amino acids 316 to 340 (25 residues), see Phobius details amino acids 352 to 373 (22 residues), see Phobius details amino acids 393 to 415 (23 residues), see Phobius details amino acids 426 to 443 (18 residues), see Phobius details amino acids 450 to 470 (21 residues), see Phobius details amino acids 482 to 508 (27 residues), see Phobius details amino acids 559 to 576 (18 residues), see Phobius details PF07690: MFS_1" amino acids 75 to 382 (308 residues), 50.4 bits, see alignment E=1.7e-17 PF00083: Sugar_tr" amino acids 87 to 246 (160 residues), 39 bits, see alignment E=4.8e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (608 amino acids)

>mRNA_148 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MDGPAPLPVIEQQRRPSDASDDAKSSADVEKQLELPAEDGATPAKDPGVARIEALYKVFG
KRGTISIGVLYASMILMACGTALDSSTTYTYYAIATSSYSAHSLIGAIDVACAIIASVSR
PFLAKIADHVSRPHAYLFALTFYVLGYILIAASKNVDTLAVGKVIYQVGYTGLDLVSTVI
IADISPLEWRGFFQGVYALPWVIFAFVSGFITEGLGVGGWRWGYGMFCIITPACVTPALI
VLFWADTQAKKQGQLGIGSSNYSVRLHLGGGKHLPLWRLALNALAIIDAVGLVLLGFGFS
LVLLPLTLYAGAKGGFANASMIAMLVVGVILLVAFTIWEAKFTAHPLMPRRIWNRTFICC
VVIDVVYYLSAYLRDTYFASWVYVIKDWSLRDYTYFTNIPTVGLCTFGVVAGILFRLTRS
YKYTQVFGLCVRTLGLGLTVNSASSDAKLVMTQILVSMGGAFSVVGSQVASQASVPHAQD
VATAISLLSMLTTLGGAVGSAIAAAVWTSTMPQNLAKKLPQLSSEEIATIFGSITSARDQ
PAEIRQGVISAYNVTAEHLFIPALSVSFVDIIAGFCAQNYRLGDTQNAIESTKVFVGKDK
EKDEKEAV