Protein Info for mRNA_161 in Rhodosporidium toruloides IFO0880

Name: 8529
Annotation: KOG1727 Microtubule-binding protein (translationally controlled tumor protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 PF00838: TCTP" amino acids 1 to 163 (163 residues), 249 bits, see alignment E=1.5e-78

Best Hits

Swiss-Prot: 69% identical to TCTP_USTMA: Translationally-controlled tumor protein homolog (UMAG_12131) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: None (inferred from 72% identity to lbc:LACBIDRAFT_311836)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (167 amino acids)

>mRNA_161 KOG1727 Microtubule-binding protein (translationally controlled tumor protein) (Rhodosporidium toruloides IFO0880)
MLLYTDAITNDELISDAYDLKEVDDVVYEADCAMITIKEGEVNIGANASAEEAEETLEEG
EQRVNNVVHSFRLTETSFDKKSYMTYLKGYMKAVKAHLQETKPDRVPAFEKGAATFAKKV
LGSFNDWQFFTGESMNPDGMVVLMNYREDGVTPYMVFWKDGMKEVKL