Protein Info for mRNA_166 in Rhodosporidium toruloides IFO0880

Name: 8534
Annotation: K07936 RAN GTP-binding nuclear protein Ran

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 PF00025: Arf" amino acids 10 to 133 (124 residues), 38.2 bits, see alignment E=2.2e-13 TIGR00231: small GTP-binding protein domain" amino acids 10 to 158 (149 residues), 82.7 bits, see alignment E=1.3e-27 PF00071: Ras" amino acids 12 to 168 (157 residues), 168.1 bits, see alignment E=2.5e-53 PF08477: Roc" amino acids 12 to 125 (114 residues), 104.2 bits, see alignment E=1.1e-33 PF04670: Gtr1_RagA" amino acids 12 to 114 (103 residues), 20.3 bits, see alignment E=6.5e-08

Best Hits

Swiss-Prot: 87% identical to GSP1_CANAW: GTP-binding nuclear protein GSP1/Ran (GSP1) from Candida albicans (strain WO-1)

KEGG orthology group: K07936, GTP-binding nuclear protein Ran (inferred from 90% identity to mgl:MGL_2972)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (217 amino acids)

>mRNA_166 K07936 RAN GTP-binding nuclear protein Ran (Rhodosporidium toruloides IFO0880)
MSADQAQVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLTFHTNFGTIC
FNVWDTAGQEKFGGLRDGYYIQGQCGIIMFDVTSKITYKNVPNWHRDLERVCENIPIVLC
GNKVDVKERKVKTGAVTFHRKKNLQYFEISAKSNYNFERPFLWLARKLVGNANLEFVAAP
ALAPPEVQVDAALMQQYAKELEAAQAAPLPEEDDADL