Protein Info for mRNA_167 in Rhodosporidium toruloides IFO0880

Name: 8535
Annotation: KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 712 transmembrane" amino acids 207 to 225 (19 residues), see Phobius details amino acids 524 to 540 (17 residues), see Phobius details amino acids 542 to 542 (1 residues), see Phobius details amino acids 544 to 562 (19 residues), see Phobius details amino acids 639 to 657 (19 residues), see Phobius details PF00650: CRAL_TRIO" amino acids 120 to 266 (147 residues), 64.9 bits, see alignment E=3.7e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (712 amino acids)

>mRNA_167 KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins (Rhodosporidium toruloides IFO0880)
MATAASLRARKDQIVEQYRDHADLVRDVQKQALAEVLTSLRDEFELDEEAVAAGTALLED
RVTVFRFCRRARFSPTAALKLLHATCHWRLTSHLRHLSPASIHSIYLTKPLFFFHPSLVD
RFGRPCAVLNLKYVQRTEDGRLDALKEFVRLGWEVGRRYLSDMSRRAGEDQDPKLQMVVI
VDLDGAGMSNLEVELLPFFLDLLKNHFPGMVGAIFVLNYGWAYAGMWQLAKRVLPNTALE
RILFPSKEELLEFFDEDHLLVEHGGNVKYDYTPANPILDKYGRPPHLTTSTASSAYPSPG
PTPSASSASLHGEVFHSAPPSRPITPAMSRRQSGLVMTSANSKAESSGSTGWFGFGRRPP
PQGEGSPSGLRRVRSLAELHKKLEQTQREIDDDDSLSEEQSEYGAGDGGSADGEQGESFG
PDSSRGPSTVASGRSSRFSSRAGSRVQSRTVSRSVSREASPSRRRSVEPLTTAGGVGAGD
MHMMSPYNASNPHFGYPAYVPPSSLDPYGIPRPHHYRRRKRDLVRTLTYLAALRFLALHR
AIQYRLNLIVAMLFRITGLGWWQARKARAKALEAARAAGGPGSVPDKKVHWVASNNGSPA
SSNSSSSTSIASIVPPAPHEHHHSHAHPSAVAIPAQSNYFIDIDPSIFYLSVLFLIIRTP
RRREKVKALCRFLAVGAPSWTLAKGREGALMALLGRERARALLEQERMARGA