Protein Info for mRNA_169 in Rhodosporidium toruloides IFO0880

Name: 8537
Annotation: K14306 NUP62, NSP1 nuclear pore complex protein Nup62

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 639 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF13634: Nucleoporin_FG" amino acids 7 to 101 (95 residues), 16.6 bits, see alignment E=1.2e-06 amino acids 75 to 146 (72 residues), 6.7 bits, see alignment E=0.0015 PF05064: Nsp1_C" amino acids 386 to 494 (109 residues), 101.5 bits, see alignment E=2.6e-33

Best Hits

KEGG orthology group: K14306, nuclear pore complex protein Nup62 (inferred from 35% identity to ncr:NCU02808)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (639 amino acids)

>mRNA_169 K14306 NUP62, NSP1 nuclear pore complex protein Nup62 (Rhodosporidium toruloides IFO0880)
MAFNFGSSGFSFGQTAASTSTSTPATSAPAPLFGQPAASTAPPAGGLFGGGATASAPSFS
FGAAAAPKPPATTAPTFSFGGAASTAPAAGTTPAPAAGGLFSTPAKPAGTGLFGAPAAGT
TTPAGTPGPAAPLFGGGAAAGGGLFGGKREADSATGEAAAKKPAPTFSFGALATSAPAIS
AAAPATTTPSLFGGAAAAKPAEAPKPLFGAAPAVGATTTPSLFGAKPAESTAASTGTTPA
PAAPSLFGAPAASAPTTTPSLFGAKPADAAAASAAPATTPAAPSLFGAKPAAPASTTSTA
APAASAPAFSFGAPASTAAAASAPSASAPAAAPASAAPTLSFGLKPPTTTPAPTTTPAPS
TALTFGAKPLTTTPAPSAPGALGSTTTTAPAAPTPSMLRGKTLDEIVNAWSVELDERTRD
FVDIAGEVREWDRVLRENGEQISNLYNSVLPLSPLQTTITSSLDYIESQQSDLSSILDAY
EAQIGDLVDQSSTSSAGLSRGGSAAEKEREKAYQLASTLSNSLDSTSSSLTSLIQTLNAL
SPALAPGADGTHQDDPLTQIAAILNAHLGSLKWIEGTTDQLRKNVRDLEGRVGDVQGKIG
ASQGRTGGAGSQNGTPVRGGALGASQLGRSTASPFARRL