Protein Info for mRNA_170 in Rhodosporidium toruloides IFO0880

Name: 8538
Annotation: K12179 COPS6, CSN6 COP9 signalosome complex subunit 6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 PF01398: JAB" amino acids 5 to 116 (112 residues), 51.5 bits, see alignment E=9.6e-18 PF13012: MitMem_reg" amino acids 173 to 297 (125 residues), 85.5 bits, see alignment E=3.7e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>mRNA_170 K12179 COPS6, CSN6 COP9 signalosome complex subunit 6 (Rhodosporidium toruloides IFO0880)
MAAQEGLKVALHPLPLLSISEHYTRISLQTGIPGTLVVGALLGTQAGRDVEVMNSFEVVV
NNEDGVLKLDHAYFVTRRDQFRQVFPTFDFLGWYSVGQAPTPEDTALHKQFFEYNESPLF
LQLNPSAPSTSPSSDAPGAKDLPVAIYESIVEIVADEPQPVFVNTPYEIVTGEAERVAVE
GVSKPEAGNEGGAHGNLLATLSTQRNALSMLQSRVSLIVQYLQACLESKARKDNETLRMI
ASLVGSLPGGSEVGGGEEAKEGGKLKEEFLTEYNDVLLTTYLSALTKQLLTANELLDKQL
LFVASSGSGGPGGGFESEKSGGRGGRGYGGRNVRAFG