Protein Info for mRNA_184 in Rhodosporidium toruloides IFO0880

Name: 8552
Annotation: KOG1286 Amino acid transporters

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 566 transmembrane" amino acids 61 to 82 (22 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 139 to 163 (25 residues), see Phobius details amino acids 169 to 187 (19 residues), see Phobius details amino acids 197 to 219 (23 residues), see Phobius details amino acids 251 to 274 (24 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 340 to 358 (19 residues), see Phobius details amino acids 388 to 411 (24 residues), see Phobius details amino acids 420 to 445 (26 residues), see Phobius details amino acids 466 to 486 (21 residues), see Phobius details amino acids 498 to 517 (20 residues), see Phobius details PF13520: AA_permease_2" amino acids 60 to 482 (423 residues), 121.9 bits, see alignment E=3.2e-39 PF00324: AA_permease" amino acids 60 to 519 (460 residues), 386.7 bits, see alignment E=1.5e-119

Best Hits

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 58% identity to lbc:LACBIDRAFT_300838)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (566 amino acids)

>mRNA_184 KOG1286 Amino acid transporters (Rhodosporidium toruloides IFO0880)
MALSDVRPASLEGETGVLRRNTSGFDEVKDVEKGIVAADATEVGMVRSGEELQRSMKARH
VAMISLGGAIGTGIFLGTANALRMGGPLGILLGYSIMGTIVYSVMVALGEVAAQLPLPGG
CVTMAARFVDKPFGFCVGYWYLYDWLLAMPAELSASAVLISFWDNHTSPAVWIAVTGFVA
VLINFGGSRVYGETEFWFASIKMVTILGLIILGIVLTAGGGPSGEVIGGKYWQNPGPLVQ
YLGIEGAKGRFLGFFTVLLQSAYSYIGSEIVAIAAAEAKNPKKTVPSAIKKVWVRIVLFY
VCSVTVIGLLVSSADPRLNLSDGTAASSPFVIAVKDAGIKALPSIVNAAILTSAWSAASS
DVYTSSRCLHGLALQGNAPRVFARTNSWGVPVPAIGVAVLFALLAFMSAGAGRAGEVFGW
FANMTSVCGLLVWGSILIVYLRFYWGAKAQGLDRREFAYRAPFQPYLSYYALGMIVIVLI
FSKYTVFLKGHWNTADFITSYLPIALFPLTYVTVYVWKRYIRKLPRSEWARTPLADLDFV
SGSRAGDDDDEPEPKTKVGKVLNAFL