Protein Info for mRNA_188 in Rhodosporidium toruloides IFO0880

Name: 8556
Annotation: K14536 RIA1 ribosome assembly protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1134 TIGR00231: small GTP-binding protein domain" amino acids 12 to 156 (145 residues), 56 bits, see alignment E=2.1e-19 PF00009: GTP_EFTU" amino acids 12 to 257 (246 residues), 184.9 bits, see alignment E=1.9e-58 PF14492: EFG_II" amino acids 627 to 690 (64 residues), 28.2 bits, see alignment 2.5e-10 PF00679: EFG_C" amino acids 999 to 1079 (81 residues), 54 bits, see alignment 2.1e-18

Best Hits

Predicted SEED Role

"Translation elongation factor 2 / ribosome biogenesis protein RIA1 and related proteins" in subsystem Translation elongation factor G family or Translation elongation factors eukaryotic and archaeal or Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1134 amino acids)

>mRNA_188 K14536 RIA1 ribosome assembly protein 1 (Rhodosporidium toruloides IFO0880)
MSTAPGAIPADRTRNLCIVAHVDHGKSSFADSLLAANGIISSRLAGTIRYLDSREDEQER
GITMESSAVSLRWRIPKLAADTKQPVLEDYKINLIDTPGHVDFSSEVSTASRLCDGALVL
VDAVEGVCTQTITVLRTVYLSHLRPILVINKLDRLITELKLTPTEAYHSLNRIIEDVNAV
VGSFYSSERMEEDLRRRERAEAAKARAVCASGDGAESPVQAGEEEEPFEERDDSALYFDP
AQGNVLFSSAIDGWAFRISRFAQLYAEKLGISEKNLEKVLWGEWYLDPKTKRVISRKKKE
ASGKKLKPLFVQFVLDNVWAVYDSVSLNNNSAKVDKIIASLGVKVRPQDLRAKDTRNLLL
SIFSQWLPLAPSAFRAIIDRIPPPAAAQSFRIPRMLHPELGHLDESIAPRNKLESDLYSG
TSATDAYSVAYVSKMFAVKVEDLPENQRKQLTADDMRAKAKRLKEAKEKRDQLLAEGNAE
EAEAVMAELDQTEKQHSEAVATGVQPDKQEALIGFARLYSGTITLGQPLYAVLPRYNSDL
PPSHPQNVKHIQPIKVEQLYMMMGRELLAVKEVQAGNLFAIGGLEGIVVRNATLCGMGSG
KEAKEGSARDEDRDCIVNLAGVSNTAAPIVRVALEPQDPSEMSKLVEGLRLLRQADPCVE
TLVQATGEHVILTAGELHLERCLKDLRDRFARIEITVSPPIVPFRETAVAAPEMAPPKTP
NQPRGTVLGTVQSGLVTFTFRAVPLPSDITDFLNANMSTLKRLQEDRRNGKTEEEGDTSA
TDAPDGADVVPPEEFWPRFEEVLSKAGREWAGLADKVWAFGPRRVGPNMLLDRTEGSPRS
LRRRLERQAALPSALQTPGPNSALTPPKSPIVAPSDPALGREFASSEFAAGELDVSSLKA
SLTEVDMSAEAMEHMPDVRELDENFDTAFQLATNRGPLCAEPVVGMAYFFEQVELHAQDM
DVTTVRSKWSNARGQLISAGQDAFRSGLLDWSPRLQLAMYSCDIQATGEVLGKVYGVVAK
RKGRIVSEEMKEGTAFFTVSALLPIVESFGFADEIRTRTSGAASPQLVFYGYETLDQDPF
WVPTTEEELEDLGEKADRENIAKKYMDAVRRRKGMAVNRAVVAAAEKQRTLKSN