Protein Info for mRNA_205 in Rhodosporidium toruloides IFO0880

Name: 8573
Annotation: KOG4267 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 105 transmembrane" amino acids 8 to 26 (19 residues), see Phobius details amino acids 32 to 49 (18 residues), see Phobius details amino acids 61 to 77 (17 residues), see Phobius details amino acids 83 to 101 (19 residues), see Phobius details PF03647: Tmemb_14" amino acids 10 to 98 (89 residues), 84.9 bits, see alignment E=2.6e-28

Best Hits

Swiss-Prot: 47% identical to TM14A_MOUSE: Transmembrane protein 14A (Tmem14a) from Mus musculus

KEGG orthology group: None (inferred from 47% identity to mmu:75712)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (105 amino acids)

>mRNA_205 KOG4267 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MSNLDNDTLFGFVSSALISLGGVLGFLRRGSVASLIAGGGSGALLAYGVQQQRFDRQNVQ
IVVGVSALLAIVMGLRFVRGRKFMPAGLVTLLSLTLLYRFGQRLA