Protein Info for mRNA_209 in Rhodosporidium toruloides IFO0880

Name: 8577
Annotation: K12571 PAN2 PAB-dependent poly(A)-specific ribonuclease subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1176 PF13423: UCH_1" amino acids 503 to 841 (339 residues), 298.2 bits, see alignment E=9.9e-93 PF00929: RNase_T" amino acids 919 to 1092 (174 residues), 75.6 bits, see alignment E=7.2e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1176 amino acids)

>mRNA_209 K12571 PAN2 PAB-dependent poly(A)-specific ribonuclease subunit 2 (Rhodosporidium toruloides IFO0880)
MAYTPYGGSPGPSAWQPLPSQYLPTPPTALAFDPLSPLLFAASPTGTIASHFCAPNAGLG
GRYTSYRGHWGAVGEMGIDQSGILSVGGGGSMPGRTGGGGSIKLANRRGVTLWSVETNPP
VPLTTFAYTPSRSSEIIATGPGSDLCIVNVTRGSIIRKQPSPLSFVHLRRSTQLIGSTIT
GSLAVLDARTPDITTGETVLAHTGGISQLETEGNYIVTIGLPLPDPYLKLYDTRYLRPLT
PIPFPTPPALVRFHPRLSGNAIVASSEGRVQILDLKDVGKSSVFQVDTPSMLTSMAVAPT
GEGLAFGDADGYVHLWAARPEEGDAKFCRYEGEVELPDPVEPPERINWRDDTPLNSIGMP
YYTSPLLSLLPQHLTSTYAASHRRVPIDSNILKSAKTVDFVGYATYPPHLRTAARRNQAR
TGQNSKIAGRLGVDAPMFRSERERADAKRRRDYGDSAATEDEPQEEDNAEDEMLKYYRKV
EIKYSRFGIEDFDFGFYNKTPYSGLETHITNSYTNSLLQALHYLRPIRTLAKSHTFEACP
KENCLLCEAGFLFRMLEDAKGMNCQASNFSRAFGSNPQIAALGLIDHENDAAKSVAYATL
IQTFNRYLLEQLTAESVLPASSKSMPSQQVSLLKNAPEGSQRKPPLAQLVKVETHSLSTC
QNCLAKSDRETSLNVIDLVYPRKAMSNEAPAPNTFSAILASSIMRETIARLPCSSCRQNT
HVRVRRAIPDMAQLPPVFVVNAGVRTADELELWMDKRDGSDGSKRFLPSRFTLSKGEGVA
VVVGAEGAAASGTDGVEYELRAMVVQIQAEGDAPHLVSLARVASEEERPGSSWHLFNDFL
VRPISEEEALSFPGKWKIPAVLFYERRDAPQLLDFSKLPLHSDPSILCEDITISKFRDRS
LVKHQPFRLDELPRKGTLVAIDAEFVSLQQEEAEFHSDGTKKVLRPSRMTLARVSVLRGE
GPETGIPFIDDHIHTSEPIVDYLTEFSGIRAGDLDPVHSRHTLVPLKVAYKKLRMLVDLG
CVFIGHGLNKDFRIINIYIPPSQIIDTVNIYHLPHRQRKLSLRFLAYAVLRSNIQADTHD
SIEDARTALQLYEHYQRLEAEGTWEEALEEVYREGKQTNFKAPVEPPPSLPRTDSPGFGA
LGPLPAPAIQPQPMFVRGVFPAPMPMPPRGPRGFMG