Protein Info for mRNA_220 in Rhodosporidium toruloides IFO0880

Name: 8588
Annotation: K11159 K11159 carotenoid cleavage dioxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 636 transmembrane" amino acids 102 to 120 (19 residues), see Phobius details amino acids 129 to 152 (24 residues), see Phobius details amino acids 338 to 354 (17 residues), see Phobius details PF03055: RPE65" amino acids 16 to 614 (599 residues), 375.5 bits, see alignment E=2.6e-116

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (636 amino acids)

>mRNA_220 K11159 K11159 carotenoid cleavage dioxygenase (Rhodosporidium toruloides IFO0880)
MGTKPRHTYKQGNYLPVREERTLEECACEGQLPQELVGGMYVRNGGEPALAELRGDDSAD
GPAYHWFDGDGMLTGVYFKPVPSSSPFDPNPRIAPLFVNKYVLTDVFLASKALGVTHPIL
PSIATLLGSIWSLHLILYSVFRALFLAFCSFFTESPLRHLSVANTSVLWHDGRALASCES
GPLTWVTLPELDTVGFWSLEGDNGEKGLREQGGMLGWMKEWTTAHPKRDPHTGELMLFHM
SFLPPYLHYSVIPSTHAPPPSARSEKAAPTPRILAAPVPIAAPRMMHDMAASRTHSILLD
MPLSLDPRNLALGKPVISYDPSKPARFGVLPRHKPTLVKWYIAPACIIFHTAFAYDEPPS
TSHDEVEAVNLVCCRLNSPRLIYSAGNLVLPESQSLPAGAKESCELYYYRFPSSSSASVT
LEPSHAFPLAAIPFEFPTVPQDRAVGPSKYVYGCSVKHGSFDAALGSAAKIDCLVKVNVD
LLVRQGKKRNEAGEGQSERPVDERGILDVIAQQTPRRGDRTSSDDDEPIRIFELPPLHYA
QESSFVPRQNPRSEDDGYLLTYVFDERQLDPSTGRAVEGAKSELWVIDAWTMKDVVCRVK
LPQRVPYGLHGHWFSREEIEEQRRAPSVRSRPPPKS