Protein Info for mRNA_247 in Rhodosporidium toruloides IFO0880

Name: 8615
Annotation: K11254 H4 histone H4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 transmembrane" amino acids 95 to 120 (26 residues), see Phobius details PF15511: CENP-T_C" amino acids 33 to 93 (61 residues), 29.2 bits, see alignment E=8.6e-11 PF02969: TAF" amino acids 50 to 88 (39 residues), 22 bits, see alignment E=1.5e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (145 amino acids)

>mRNA_247 K11254 H4 histone H4 (Rhodosporidium toruloides IFO0880)
GKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLE
NIIRDSVTYTEHAKRKTVTSLDVVYALKRAGKTLYGFGYVLLVPSLSLLCSLMLTRSFLV
LQSVEILLRRLVLPFVFPGHTCRIQ