Protein Info for mRNA_260 in Rhodosporidium toruloides IFO0880

Name: 8628
Annotation: KOG2534 DNA polymerase IV (family X)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 PF14716: HHH_8" amino acids 51 to 118 (68 residues), 34.3 bits, see alignment E=5.2e-12 PF10391: DNA_pol_lambd_f" amino acids 139 to 181 (43 residues), 37.1 bits, see alignment 4.5e-13 PF14792: DNA_pol_B_palm" amino acids 185 to 312 (128 residues), 53.4 bits, see alignment E=5.6e-18 PF14791: DNA_pol_B_thumb" amino acids 322 to 378 (57 residues), 54 bits, see alignment E=3.2e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (388 amino acids)

>mRNA_260 KOG2534 DNA polymerase IV (family X) (Rhodosporidium toruloides IFO0880)
MGDEKDEENGGRYEGIEDDASGGTSSLSTVAHRPAVPPLACMRYSPRPCVNQDIVDALKP
LRDWRFAEYGSGSPEGISYATAISVIIACPYKIRSGEEARALFKVGGKIALRIDEFLETG
RVKEADDLAQNSRYQALKSLMTVHGVGHHTAKQLYEQGYRSAEDMRRSGKWEKEFRYHDD
IQIPIPRSEVESIERFVKLQLDRIQRGSHIVITGGYRRGKVMSNDVDLLITFPHQDGKER
GILRKLCRRLEAKGLIPPDGILSFSEPATLRSIKENKKATSFDSLDKALVVFRHPANGTT
RKRDMYRRVDLIISRWPSFGAAVMGWSGSTQFERDLRKHAEKLGYKFDSGGLRVRGTHEV
VPTMMEKDVFRALKLKYIRTLEFRNADP