Protein Info for mRNA_261 in Rhodosporidium toruloides IFO0880

Name: 8629
Annotation: KOG1745 Histones H3 and H4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 226 PF00125: Histone" amino acids 30 to 147 (118 residues), 147.7 bits, see alignment E=1.3e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (226 amino acids)

>mRNA_261 KOG1745 Histones H3 and H4 (Rhodosporidium toruloides IFO0880)
MARTQVRPPPACRLDASDALADLVPLDPQQTPRKSTGGKAPRKQLAAKAARKSAPAAGGV
KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA
AEAYLVSLFEDTNLAAIHAKRVTIQPKGESTRFPSPAAFLANPPPAPPRRHPARSPSPWR
APVDVAVPPLSLAYPPSSFVPPVVVCLPFVSCNSFRLSPAPTPGRA