Protein Info for mRNA_265 in Rhodosporidium toruloides IFO0880

Name: 8633
Annotation: K00876 udk, UCK uridine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 transmembrane" amino acids 449 to 467 (19 residues), see Phobius details amino acids 479 to 496 (18 residues), see Phobius details TIGR00235: uridine kinase" amino acids 58 to 258 (201 residues), 225 bits, see alignment E=3.9e-71 PF00485: PRK" amino acids 60 to 240 (181 residues), 169 bits, see alignment E=1.1e-53 PF14681: UPRTase" amino acids 321 to 544 (224 residues), 160.6 bits, see alignment E=3.8e-51

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (551 amino acids)

>mRNA_265 K00876 udk, UCK uridine kinase (Rhodosporidium toruloides IFO0880)
MQRSPNPPSASSSAHPPPSSHPHPTSSSTPSRSPPKNVVVTEKGRAPWYSKDGKPAPAYI
IGIGGGSASGKTRVAMQVLKSLGVPWVLVISQDNFYKSLTPEESQNAFNNNHDFDSPDSF
DYDKLVDCIREMKECRATHIPNYSFVKHARLDETTYLYGANVVIVEGIFVLYDKNLRDLL
DLRVFVQCDSDLMLARRLRRDLVERGRDVNGVLDQYLRFVKPALDNFIQPTNRFADIIVP
GHNNERSIDLIVSHVQRQLAERKRQFRGELYKETVSNGTGSIPSTPSVEKSEAESGLALI
KEQCGVSEGTELPDTVHLLRQTPQMRGIHTLLRSTETDPEDFIFLANRLSTLVIEHALSL
LPYREKPIETRTGIEHVGMELAIPDGHLCGVSILRSGASLEKGLRRVVRDVPVGSVLIQS
DVKTGEPLLYQVSLPQCLTASLESAASSYVLLLDSQIGTGAAALMAVRILLDHGVKEENI
IFCCILVSKVGGVWALKRAFPKVRIACSAADDGLEERVEKTHSGEKKIFTILPGLGSFGD
RFFRSEHSDYA