Protein Info for mRNA_267 in Rhodosporidium toruloides IFO0880
Name: 8635
Annotation: K03381 catA catechol 1,2-dioxygenase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K03381, catechol 1,2-dioxygenase [EC: 1.13.11.1] (inferred from 52% identity to bfu:BC1G_06739)Predicted SEED Role
"Catechol 1,2-dioxygenase 1 (EC 1.13.11.1)" in subsystem Catechol branch of beta-ketoadipate pathway (EC 1.13.11.1)
MetaCyc Pathways
- catechol degradation to β-ketoadipate (1/4 steps found)
- superpathway of salicylate degradation (2/7 steps found)
- catechol degradation III (ortho-cleavage pathway) (1/6 steps found)
- aromatic compounds degradation via β-ketoadipate (1/9 steps found)
- mandelate degradation to acetyl-CoA (1/18 steps found)
- superpathway of aromatic compound degradation via 3-oxoadipate (4/35 steps found)
KEGG Metabolic Maps
- 1,4-Dichlorobenzene degradation
- Benzoate degradation via hydroxylation
- Carbazole degradation
- Fluorobenzoate degradation
- Toluene and xylene degradation
- gamma-Hexachlorocyclohexane degradation
Isozymes
Compare fitness of predicted isozymes for: 1.13.11.1
Use Curated BLAST to search for 1.13.11.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (304 amino acids)
>mRNA_267 K03381 catA catechol 1,2-dioxygenase (Rhodosporidium toruloides IFO0880) MPSAAPDYSAYTQSVIDAIGSKASPRVKQAFPILIKHLHAAIVEAEVTVDEWLEACDLLI EAGKVSSEKRNEMVLVSDVLGVESLVDMMEHARYAQAGRDATFSAILGPFYRQGVPPQPN GSSIIRMKEPGAPFVHLHGTVTGKDGKPLKGAFVDVWHDAPDGFYDSQSPDKPEHHCRGR FETDSNGNYSLVALKPTPYPIPFDFSAGKLLNMMDRHPYRPAHIHFHVQAPGHKTLVTQV FSRDSQYLDDDAVFAVKDSLIVDFVKPTAPLPKGGEFDEEIKYELKYDITLAGDGEVDNS QYQG