Protein Info for mRNA_278 in Rhodosporidium toruloides IFO0880

Name: 8646
Annotation: K03134 TAF10 transcription initiation factor TFIID subunit 10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 PF03540: TFIID_30kDa" amino acids 93 to 142 (50 residues), 82.9 bits, see alignment E=5.9e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

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Protein Sequence (211 amino acids)

>mRNA_278 K03134 TAF10 transcription initiation factor TFIID subunit 10 (Rhodosporidium toruloides IFO0880)
MNPNDLFLRSHARAESSQQTQHTHNTRGQASASNGASSSGVDQKPLDAQMMLDEAGAGVG
GAGEGQKSRRELEQERKDLELAQLLEMMDDYKPVIPDEVTDYYLQRAGFDTNDVRVKRLL
ALSAQRFISSISADAFQYARARTAAGPSGRANVTGTSSAVGPGATGAAGGSGGAAGQPKA
KGRQRTVLTMEDLSAALKEYGVDAGRAPYYL