Protein Info for mRNA_279 in Rhodosporidium toruloides IFO0880

Name: 8647
Annotation: K02908 RP-L30e, RPL30 large subunit ribosomal protein L30e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF01248: Ribosomal_L7Ae" amino acids 206 to 298 (93 residues), 70.2 bits, see alignment E=5e-24

Best Hits

Predicted SEED Role

"LSU ribosomal protein L30e" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>mRNA_279 K02908 RP-L30e, RPL30 large subunit ribosomal protein L30e (Rhodosporidium toruloides IFO0880)
MHNKANASTAQSLESVFGELLWTSSLRSPILLALLSSAHPDAHPTISQSVYHSFALSAPA
TVSPTTTEVARGRAGRRDLMRTENSTRSLRALSIALGRSGMGASCCWGVKGLAGGWASRG
DWRGHVGDPELDPLSSHPSQRVEGGLGRAGGVTGVLPDAQMVRRMSGIRGSASVENPRSL
ARLGAYRRTRPVAPAAQKKTKKSADNINARLALVIKSGKYSLGYKSTLKAMRSGKAKLVL
ISGNTPPLRRSELEYYAMLSKTPVHLYQGSNVALGTAAGKLFRVGVMSVEDAGDSDLLSI
TA