Protein Info for mRNA_289 in Rhodosporidium toruloides IFO0880

Name: 8657
Annotation: HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 transmembrane" amino acids 14 to 33 (20 residues), see Phobius details amino acids 126 to 149 (24 residues), see Phobius details amino acids 161 to 181 (21 residues), see Phobius details amino acids 191 to 221 (31 residues), see Phobius details amino acids 254 to 276 (23 residues), see Phobius details amino acids 288 to 310 (23 residues), see Phobius details amino acids 371 to 395 (25 residues), see Phobius details amino acids 407 to 428 (22 residues), see Phobius details amino acids 448 to 472 (25 residues), see Phobius details amino acids 502 to 514 (13 residues), see Phobius details amino acids 525 to 546 (22 residues), see Phobius details PF00083: Sugar_tr" amino acids 87 to 302 (216 residues), 27.6 bits, see alignment E=2.2e-10 PF07690: MFS_1" amino acids 127 to 462 (336 residues), 73.9 bits, see alignment E=1.8e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (553 amino acids)

>mRNA_289 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MTRSNSSNTASPGVLLRPVLPIHLLLCPAALMIPPERLRLPHVPWTDEESRFEKARRRRR
ASVAAVAQADSQNSSKQSKQRKAGQRRRVRSERANLVDTMGWLHTIGEELGFGHIARSHS
RRDVSLLFFSRFIRMAGFGSFAPVLIIFLREIGFSDRSVGLFLSATLLGDVLLSLFVTWT
ADAFGRRRMLALGSLLMCASGVAFALSRNYIVLLVSAIVGIVSPSGNETGPFSALEQAML
SGLTEPEGRVSLLMWYQVLGFLGISVGNNLTGVIVGGMERYGKTTEQAYRAVFTAYAAIA
AIKVLISFLMTRHAEVDRPRAPAPAAPAPSAQQNGDSERQPLLQGQRCEANPILDPPAVN
PSPPGLPIGRLVTLCLIFALDSFASGLAPLSFISYYLRTVHAAPVNLIAHFFSITAIIAC
FSQLAAASISKRLGIIGTMVGTHTPAQLLTIALGLAPTLPIALTVFTARAFLATMDGSVR
GAFLAAVIPNEQRTRFLGIINVVRTLATTPGPTFSLTLVSMGHIRWSFVLMGSIKILYDI
CLFIGFKTARLEH