Protein Info for mRNA_305 in Rhodosporidium toruloides IFO0880

Name: 8673
Annotation: HMMPfam-Peroxisomal biogenesis factor 11 (PEX11)-PF05648

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 33 to 49 (17 residues), see Phobius details amino acids 76 to 92 (17 residues), see Phobius details amino acids 112 to 129 (18 residues), see Phobius details amino acids 141 to 162 (22 residues), see Phobius details amino acids 240 to 258 (19 residues), see Phobius details PF05648: PEX11" amino acids 16 to 258 (243 residues), 77.2 bits, see alignment E=6.8e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>mRNA_305 HMMPfam-Peroxisomal biogenesis factor 11 (PEX11)-PF05648 (Rhodosporidium toruloides IFO0880)
MSKLSLSPFDLPSPALAHFNRVAGSQSGQDKLFMVYQYAAYVVIAALNSKRFGNKARRDL
AVRIDKLRATISDARTLYRLFGIFPIISWAQSLNDPASQPKDKQILRLQKLQAWSMLLYY
PLEHLYYLAGKGVFKISPKRIGEIAVWSCRFWAAYVVLQIFTIRRSFQLVREERASVLRA
NRERIRKGDTAPESVKHEKDQLRVLANKERDLKLDCWVQAGYLPLTAHWSLPGGILPNNT
WVGICGTVAAVAGLKGVWRRTA