Protein Info for mRNA_311 in Rhodosporidium toruloides IFO0880

Name: 8679
Annotation: KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 972 PF04851: ResIII" amino acids 338 to 542 (205 residues), 27.1 bits, see alignment E=6.2e-10 PF00176: SNF2_N" amino acids 358 to 680 (323 residues), 203.6 bits, see alignment E=5.9e-64 PF00271: Helicase_C" amino acids 814 to 911 (98 residues), 60.9 bits, see alignment E=2.3e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (972 amino acids)

>mRNA_311 KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily (Rhodosporidium toruloides IFO0880)
MATLGWRANTNHINLTLSSSDEDEQPRFPSRNAHRPQVERLAGSGGGRRLKRAPRIVDSE
EEEEQNGGEDDELKRAVQLSLKKRSDLEEEDELDEGDSRGSCIVRDDAASAQSASEDGDS
STEEEPDTEDEEGEGLNDEEDELAPLDDMRRPAQQAVRPAQMTVEEQLRKYVFVKGLERP
VAARLIPRNAPFGSITNTAASSSSSSASSSSSLFNKSAAARPRLPSTLDAFGFKPATTER
KVSAKERAFEQMREDQKRLGVPIDVPKNAHHSAKEAEDSDPLAAIDDERALASAMQDLDV
NDDASPKDQESALKELVSSTIDMDNVDTSSGPPAGLKCTLLPHQVQGLHWLKDRESGKKR
GGILADDMGLGKTVQLISLLLANPSDREKCKSKTTLVVCPVALMGQWKQEIESKTDGRLR
VLIHHGPSRTDEGRKLQKYHVVITSYNTLSSEWVDPKPRQKKGGYGFSDEEDELDELGKL
SAKLSKKGGKVKDDKGPLFDDDYMFYRVILDEAHQIKNTNTKVNKACCDLKAHYRWCLTG
TPLQNDVMDLYAIFKFLGGRIVRPLHDVSEFKAKIAKPLKSKRTKTALARLQIVLKAIML
RRTKTMTVDGKPLLTLPKREVVVVKGPFLDQKEADFYKKIEEKMQEALSEMATSEIMKDM
TKVLVRLLRMRQACNHPSLVTKNSIEDQRDALDPTPQRARTTPTGSGEPSPSASHADGLA
DLLDGMSLNTCALCSAAASTNDSGYCKSCDRDMERYASLSSSTKIKRTLHILEGIKRESY
EAIEAEEQSEEDEQDSDDFELGIVEVPKKPKLGMKKTIIFSQFTSMFDILEPFLRKGGYR
YVRFDGQLNAKEKEAALDAIRNNPNITVILVSIKCGAVGLNLTCCSRVVLLDLWWNPAIE
EQAFDRAHRFGQKDDVKIYKLTIDDTVEERILKLQADKAELAHAALDGGDLSKGNKLSVQ
EILSLFKLDKLD