Protein Info for mRNA_312 in Rhodosporidium toruloides IFO0880

Name: 8680
Annotation: K20103 DDX60 ATP-dependent RNA helicase DDX60

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1970 transmembrane" amino acids 424 to 442 (19 residues), see Phobius details amino acids 454 to 473 (20 residues), see Phobius details PF04851: ResIII" amino acids 991 to 1148 (158 residues), 52.4 bits, see alignment E=1e-17 PF00270: DEAD" amino acids 994 to 1148 (155 residues), 55.2 bits, see alignment E=1.2e-18 PF00271: Helicase_C" amino acids 1470 to 1544 (75 residues), 25.4 bits, see alignment (E = 2.3e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1970 amino acids)

>mRNA_312 K20103 DDX60 ATP-dependent RNA helicase DDX60 (Rhodosporidium toruloides IFO0880)
MRVNFARWHTSRSRPQRLTMAQAADGATNGSGQLTAHDALNRLDSCVLLSPPHLLHSQGP
LQPPLSMTGGRWSTVRLQMGWMGYVRGAASLEEAYSSDAVDSPRFILSALSLRTLQRKTP
VVRLRTSSKLRCCSALTSSSLAPPIPDLSLHLVLSYPFSPPFQHASWFIAQYPRWMDVLI
YSGQELFILDGDALLQFVLDDELLGLGRAGDPSMQLLHATWLMEKTIEELLKKDTTFEIV
FFESQAHSTIHTGESDYITSARRLARSVLMRRANLPDTKVHHFESLQDEEWKAWYQRKRP
MYVLGYDGGLQTKENELQAERILLQRQNLYDTVHQSLPYVLLQAAEFTDTKINTYFYDVV
RGTVEALPANITAAVSAARAALDKALPTLPSISSAPSSVSVEDLLSSAASTFLASSPSAQ
ESTLLYLYLSHVLLLPTIPLRSRAQRIPTPSKELMAVLEPFLAKFYASLSAAIEALPESE
RTNPLADLDIDGRIFFLLLVEVLNGDVSSSSLGDFLGPQVASRLSSLWSSLSSTSEPDLA
ALRSALPSQSTELPALPSPLTEDTVLPYTSSIFTEHLSSVNVSVSASSTLATLPNKLDEK
SVFSDSHGWSNPKPALPTHLGGPPPPVLDYREKKKRDRKEQRFMAQMQKSAASLTGALGG
ALKQQVIPAVGKRSASVLREKVAAAAKSSRPGSGINTPALSESGASTPTGSEVGRDGSTT
GGRGSKKDKVKVLTSREKLIAENAAKKVQEEGKENYKWWIERLDDLKDLPIPGQISQITS
YLKNKRAQDPWLGTEMVVKRLDLELRAWIADDRREADDVKDRYRVFIARTASALLQKYLR
AQQDGSGAVIITEKQGRAITNTLAVMGLECLIPEGIEFVAIDKGESKKDKKAAEDDGKKK
KGGAKPGSKAAQAAKKDATASASSKASKGEKDERAKLTFHYCSLIDKDEGEALYDWMEID
ENPLEWQLRNMGEYMARELDSKPDPRVDFEPDAWQREVLDNIDQDKSMLIVAPTSSGKTF
ISFAAMERVLRESDEGVVVYVAPSKALVNQVAAECFARFSKEVPGQALWAVHTGDYRVNN
PQNCQILVTVPQVFSEMLLNPALARVWTPRIKRVIVDEIHAVAEEGSGMWEQVLLMNPAP
IIGLSATVGAPERFSAWLESVEQANGRQYALIIHTHRFNALRKFAYAPRMNEWPVKPIGP
LDEYRSRPQIFAPVHPVAALGLGDPEMPEDLALEPRDCLALWRAMSTVDKELDPKLKPRK
FFAPTPVIAIRHCIEYEKQLKKILLEWRNEPDYASPTSRFSRTVEFLEKPLRDSLGISEK
LIEDATEDQFNSLFTPLLADLNAQNQLPAILFNFSRDHCESLAKRISKDLETAEDQWRKN
SSTFKERVARAKAAEKAAAKKAKAMETSTVNRKQEEEAARMGVVEEAPSFDPEAPSEEFT
FVGKGISYVEFKKDVDDLLFLDMDPWLINALRRGIGVHHSGMPRRYRVLVENLYRRGVLR
VVISTQTLALGINAPARTAVFAGDSLELNPLNFRQCAGRAGRRGFDLVGNVLFVGVRLDR
IQRLLLSKLPKLGGTFPLTTTLLLRLNNLVHGSEEAELPKMAVETLLDLPQLAVSHASAS
GNRDQTRHFARFAIEYLRRVGLLDENGTPKTLYGITSALYSEEPANFALAALLRSGKLHE
VAKGLDSDPDNTMRLMLTILATLFARVHRRKQSTETLRSTRNSTSLIVLPPLPDSSRKVL
DEHHKAVLSVFTTYAKEYAEQNEDQLASDDQLPLSQRKAAAAESADSAFTSKLRQSELQF
ESRSAFAAASGHGDDFHNITELARSARAGVVVQQHAVPELASPPFDSPEHDLDAFVVDFY
RHGDLQTLIRESSIERGDVWYRLQDFDRALAAIHSAIKTLCTSKGDDVEEDLDVEDARDA
REDRGHDDGPSSRDKALVRPPGLGDDDWKLYQVIDTLHKDFSAKFYAIFA