Protein Info for mRNA_349 in Rhodosporidium toruloides IFO0880

Name: 8717
Annotation: K12825 SF3A1, SAP114 splicing factor 3A subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 728 PF01805: Surp" amino acids 20 to 72 (53 residues), 47.2 bits, see alignment 2.7e-16 amino acids 122 to 173 (52 residues), 54.4 bits, see alignment 1.5e-18 PF12230: PRP21_like_P" amino acids 207 to 420 (214 residues), 132.5 bits, see alignment E=3.2e-42 PF00240: ubiquitin" amino acids 662 to 725 (64 residues), 32.9 bits, see alignment E=6.5e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (728 amino acids)

>mRNA_349 K12825 SF3A1, SAP114 splicing factor 3A subunit 1 (Rhodosporidium toruloides IFO0880)
MTATPVPNGTIILPPPAIKAIVDKTAAFIAKSANASLLEDKFRQREKTDSRFAFLNDADP
YHAYYADRLAAFKAGEQPEQKEEEKADGAGAQAKDESDGRPAEPPALEFLVEDPPKINAV
DLDILRLTALFTARSGRKFTSDLAAREARNYQFDFLRPSHSLFGYFNRLVEQYTKILVPS
KELISRVERRAGGPPDSSADRLSVGRREVLKDARQRVEWEKWESERRKEEEDKAEAERIA
FAEIDWQDFQVASTIEFTENDEAGIAELPPPMSLSEVENMSIAQKKMAAMIMEGQQPADQ
GEGEAEEAEMEMDDEDEEAAQTPEVEYKREDVVEVQTLDSNLPVKIRKDYVRSKKAKAGQ
AMTTFQGQQVPVEELSKHIRYETLDPRWKEEKRQADLNRAASAVMPGGTDVSASLRSIAA
HRPDIFGGNIGDAERQRQAEQMAKSRAREKQVWDGHAASKESITLRYQQTANLDEQIAAL
HKAKGVLATEESNIGPSIPTNVTQSAPVEQTTLTSGASISAAPQPAQITVERTTSQNFLS
TGIPSGFASPSGASPAPGTPNPAQPPAPLPAGLPARPPVAAPGDAVPGSTAAPPSASSEP
ATGTTRPLPSSFDSPAEPSAKRARGTDGHIYPEEDWLATHPDPVRIKVQLPDYPEKPAWG
CKGQQVELEVPLTLLIGTVRDRISGLVGVPVGKQRYMYNDRLLANATTLAALNLDNGDVL
TLQLKDKK