Protein Info for mRNA_363 in Rhodosporidium toruloides IFO0880

Name: 8731
Annotation: K14776 DDX10, DBP4 ATP-dependent RNA helicase DDX10/DBP4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 822 PF00270: DEAD" amino acids 71 to 241 (171 residues), 162.6 bits, see alignment E=1.7e-51 PF04851: ResIII" amino acids 86 to 233 (148 residues), 29 bits, see alignment E=2e-10 PF00271: Helicase_C" amino acids 297 to 406 (110 residues), 81.7 bits, see alignment E=1e-26 PF13959: DUF4217" amino acids 448 to 508 (61 residues), 68.3 bits, see alignment 1.1e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (822 amino acids)

>mRNA_363 K14776 DDX10, DBP4 ATP-dependent RNA helicase DDX10/DBP4 (Rhodosporidium toruloides IFO0880)
MAAQAAETREDKGKGKANGRVQKKLGDRSDLDDLQRRVDTFETTDAQEFGDLPLSRQTLA
GLKSAYYTRMTDVQQRALPLALKGKDVLGAARTGSGKTLAFLIPVLEVLLRKRWGQQDGL
GALVISPTRELAVQIFEVLRKIGHQHNFSAGLVIGGKNLKHEQERLSRMNILIATPGRLL
QHMDQTLGFDCDHLQLLVLDEADRILDMGFSATLNAIVANLPKSRQTLLFSATQTKSVKD
LARLSLKEPEYVAVRETGAGKGKEKAEDGEGEGEEEQVEEVPKNLEQHYMVVELPQKLDM
LWSFIKTHLYTKTIVFLSSTKQVRFVYENFRHMRPGVPLMHMHGKQKQMQRLEIYQRFLT
SKHAILFATDVAARGLDFPAIDWVVQVDAPEDVETYIHRVGRTARYQAKGRALLFLLPSE
EEGMLKRFEAKKIEVNKIKANDKKKQSIRSQLQNAAFQYPEIKFLAQRAFISYVRSVHLQ
KDKSIFKLDALPLEEYAASLGLAGAPKIKFQTKQEASEKKNKVRQVEDLRREILEKKGGE
ESEEDEESEGEESGSESEEERPVDEGASDVEDDDKASKGGVKTKYDRMFARKSQTVLSDH
YNKVIDRDEDNDALVGGADDDGEDDFITIKRRDHELNESELPASSFLSKRKLKQGMSKKA
MLKTKGNSTKLVFDDEGDAHEVYELGDEEDFAKLGKAEDLQKEFVAKEGAELARQDVLDK
QRQKEKRQEKKRKRRDMERGGPSYGDDGAEFEPAGEIIHPDFSDIDFSDRDDDADEPAER
PARAPVTKKQRRARFEEEDEEPEAKKPKVDLEALALQALSRR