Protein Info for mRNA_364 in Rhodosporidium toruloides IFO0880

Name: 8732
Annotation: KOG2498 IK cytokine down-regulator of HLA class II

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 PF07808: RED_N" amino acids 60 to 160 (101 residues), 38.1 bits, see alignment E=7e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (472 amino acids)

>mRNA_364 KOG2498 IK cytokine down-regulator of HLA class II (Rhodosporidium toruloides IFO0880)
MDQDAFRHLLATPAHPSSSSTPSSSRSRFGQAPPKRPAGTAADAKELSTEFKPRKTAFKP
KRAPDGSVYRDRAAERRLGKDGDFAEAEKLFEARCQRLQGSLRGHRQGHARDANEGGDAK
HSILVKGLDMALLERNKHEQAKKADEELGDVEDELEAALAAPPEPSTLTSTAPPAGEGKK
KTRDELLAELKAMRGGQAASASPPVEKDPRFKPLGGSSGDKMGKGKEIAGAASGWKAVGA
AGDGEKKKRKKKKVAPAPAPAVTEAQPAKKESSPPPAPLPPQPAPEDIDDDMDIFGDAGE
YKGLDSDDSDEEDSTPAKPAASPPPHAEAAPATKRKYFDDDEEDDPQYSTSTAPNAVTDL
AAKQAAADAAAAEVKRSRRTGGGEDDEGEEEEAAAMRLEGLSRSGPSVKELLEMDKAAEA
EEKRKAQKKAKYQAKAADRRENMTDADKTNQDVQKMMAYLAKKEGKKGGKGE