Protein Info for mRNA_378 in Rhodosporidium toruloides IFO0880

Name: 8746
Annotation: K05012 CLCN3_4_5 chloride channel 3/4/5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 841 transmembrane" amino acids 81 to 98 (18 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 180 to 205 (26 residues), see Phobius details amino acids 225 to 245 (21 residues), see Phobius details amino acids 254 to 270 (17 residues), see Phobius details amino acids 282 to 306 (25 residues), see Phobius details amino acids 317 to 335 (19 residues), see Phobius details amino acids 359 to 378 (20 residues), see Phobius details amino acids 398 to 419 (22 residues), see Phobius details amino acids 448 to 469 (22 residues), see Phobius details amino acids 476 to 496 (21 residues), see Phobius details amino acids 540 to 566 (27 residues), see Phobius details PF00654: Voltage_CLC" amino acids 190 to 571 (382 residues), 284.9 bits, see alignment E=1.1e-88 PF00571: CBS" amino acids 610 to 664 (55 residues), 23.8 bits, see alignment 5.2e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (841 amino acids)

>mRNA_378 K05012 CLCN3_4_5 chloride channel 3/4/5 (Rhodosporidium toruloides IFO0880)
MPEPHEASTSTHTLDGQSGWNGRTDGANGFPSFPKHIFSSLNPNDHSSRSTAPLPPASAT
VPGGSSIDWTQEYARERLRKSLILATPGIRGVVVRLWVASKPWVVVVLTGMATGVIASCL
DILSAWLSDLRLGACRDMWWMSRGLCCAGLDPQETCRAWRTWGEIVGDEKHVVLRALTQY
SVYIAFAVAFALVSSAFVNMFAPFAFHTGIPEIKVLLGGYVMDGFLSPITLLIKSLGLPL
AVASGLSLGKEGPLVHVACCIGDAMLRPFASLRDNGARHREILSAAAAAGVSVAFGAPLG
GVLFSLEEISTFFPGSTLWQSFVCAIVAAVTLQYIDPFNTGKLALFTVHASQVWRGFELV
PWLLLGIAGGIWGAWFIRLNEEWERLRRASGMRQWPITEVGVLALFTAVVSYLVIYMRIP
SAELVVNLFQDCGGVDPYGLCDASNTSSIVFLLLLTAFAKTLLTAVTFGASIPAGIFLPS
LTIGACAGRAVGLVMHQIQKANAESWIFADCPADGGCINPSVYAVIGAASALGGVTRMTI
SLVVILFELTGAIDIVLQLMMAVMVAKFTGDYISKEGIYETWINLRNYPFLNNKADYRRD
TVLARHVMTPSHELACISDEGWTLSRLEALLDEHEYRGFPVVRTERDRLVLGYISRADLQ
DAIEHARRVVAVSPTTLCYFSAPDRRGRRARGEQIPIPLDPARASTTATFDLDLEASHRR
RTPAAAAEERDEPTPGGTAAEPWISLVPWMDEIPVNLSQDTPMEVVVQMFQRLGLRFVLL
TRRGMLAGLLTKMDLHRHIQGERDEERGSLFFPRSRQDEAEPRPSETPLMERGGHVEQGY
R