Protein Info for mRNA_380 in Rhodosporidium toruloides IFO0880

Name: 8748
Annotation: K15322 TSEN2 tRNA-splicing endonuclease subunit Sen2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 PF01974: tRNA_int_endo" amino acids 314 to 427 (114 residues), 58.3 bits, see alignment E=3.4e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (470 amino acids)

>mRNA_380 K15322 TSEN2 tRNA-splicing endonuclease subunit Sen2 (Rhodosporidium toruloides IFO0880)
MAQLQPHTSQTAPRINATRPENLNSSSKRISKAQLLQQYAQLLPLAPAKQSYLQSLLSAL
RLAPGLAPPEIEAVWDDLTQSVWVQDEASMMRLWKQGFFGKGFLSRSEPSWKRRVQNRRA
ELEGREKRLTSEEITALRRIERKGTKLAKKLERDQERFLAASAAASSIGSAPGTPSTPSS
PLPANDADELDSRLEKIAEEQEEAAASPSAADKGKAKAEDRDADEDVEKEEPPEKWQLGA
EHSQLQPEEAFFLVFAIGCLALTGPSDTSPTASKRLSILETLRLFLLTSCPSLPPSLTLA
PESDPRLNRLDSPFFLSYAAYHHYRSMGWVVRSGVKFCVDWVLYGQGGPVGGHAEFAVVI
VPTYVNPADSASNPFRSTSTFAVDQDPDARDEEHRRGEGERKSSWKWFHTINRVCSGVKK
TLVLLHVVIPPFSSLPSEPNWVANNPAQALAKLDMREVVVRRFLAGRMRD