Protein Info for mRNA_381 in Rhodosporidium toruloides IFO0880

Name: 8749
Annotation: K10415 DYNC1I, DNCI dynein intermediate chain, cytosolic

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 729 PF00400: WD40" amino acids 378 to 411 (34 residues), 13.4 bits, see alignment (E = 6.3e-06) amino acids 529 to 567 (39 residues), 16.9 bits, see alignment 4.9e-07

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (729 amino acids)

>mRNA_381 K10415 DYNC1I, DNCI dynein intermediate chain, cytosolic (Rhodosporidium toruloides IFO0880)
MSERRRAEIAEKRTRLAALKQAREEREAASRASASASLAASGLPTPVGGASRASSEAGRQ
ARGSLGASTSSRNDEIENLLRGVGVGRERETVDAGSPGADNLRRSSGLGRSAGAGSSTAA
SAVGEDLTSSRASPTVEMVAGEPEWTAPSSEAPNDEASALPTLTSSSIEVYTLPPRPKVV
YDKSIQTSTDLFPSASVQTAAADPSISTTTGGAGRETAEELRARIIAELEAERKQLDAEI
AEEKRLAEEQLEVERARGLSGEKLSSVFANPAFVDFLEQSSKVVQRALSDSYDYLRDYTI
TTDASREEEEGKRAKVRLLGTWQDQQWGKGRSVTGVDWSPKFPELFVASYNKNPMAVNEP
DGIAAVWNLHLLERPEFVFHAQSDILSIAFSPFHPNLVVGGTYSGQILLWDTRSRHSNPV
LKTPLSASGHTHPVYSLSLVGTQNAHSLVSASTDGVVCTWTLDMLARPQETLELVHPAHN
KTDEVSVTALGFPLGETTTFWCATEEGNVYSANRYDRAGAKAGLVQSEIYRGHSGPVTGI
DFHPVEGSVDLSDLFLTCGVDWTVKLWRAGGALGGPQAGKTGATSSKTSSSSGGANAIAP
LLSFEEADEYVFDVKWHPLHPAVFGTVDGAGKFDLWNLNTDTEVPIISTAVGESSPAASR
PLGGSSGRRGLNKLAWERKEGRRAAIGSSDGKVYVYELSQDLVTPREGEWDQMRKTCNAA
LAAQQQQHA