Protein Info for mRNA_389 in Rhodosporidium toruloides IFO0880

Name: 8757
Annotation: HMMPfam-Vacuolar sorting protein 9 (VPS9) domain-PF02204,ProSiteProfiles-VPS9 domain profile.-PS51205,SUPERFAMILY--SSF109993

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1229 PF02204: VPS9" amino acids 749 to 815 (67 residues), 62.5 bits, see alignment 1.9e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1229 amino acids)

>mRNA_389 HMMPfam-Vacuolar sorting protein 9 (VPS9) domain-PF02204,ProSiteProfiles-VPS9 domain profile.-PS51205,SUPERFAMILY--SSF109993 (Rhodosporidium toruloides IFO0880)
MSSLEDTQPANGSGGEDLMAGPRATVPRPPSRRSVASSDGTSAHPLLAPSADDGAASPSS
GSYAVYSPGKKRAAVSGSSGFSSSSVTPSPLSPNEGPLSPSSASSATHTPPFVPTTAPFL
PPLVSRPSNSTLPSPSGRQYARSVSEAKEKLQKQALKAELQGLGLSAESAGSALVNKLAT
LGEDADFKGLQAVLAGGKTTLLLPAEKLESPAQLTPSFVLDHLVLLDPPASGSSAAIERP
FVTLSGLRGVLVGGELVFTSCAAESQRQDLADYASEDLQRQLRGVAPLTAPPTTASYPST
MLISAFTTLSIPQSRSATPPSATSSRTTSRLAALFSKPPVAETGTFDLPPVVPAPAGLLG
DSSAQTNDVAASGSSSSVDVAVLAVGKVVRRQEVLASLRSATSAHMKLLVRGVEGAQGEA
DVGVTVSSFAERFCPSPASPEASTSGKATTPSVPTSGTNLLDADPLAVADTYQETMHAVR
LDLTRNIGSAPSAPSEIDSSTAPSLEDFSQLEERVDASLEKVEEVVTSVLYDRLFAPPTA
RDLQEDENLASRIAALNVLELDLEHLGLELGDEEGLAGWEGRSSNARDSLEDLAALVGKE
LNRLEDPEERTPNAKLAILVECHKILVDGLSKLPPIPLKKEVTGDDKSSLSDAPAEVEMD
DASSRSSSLPPSRPMSPPSASGSSSAEDADDELLKTPKPPPAADHDVPEIKLPDPSKASN
EATSSSLFDPVPAPSPPVSIFETKRRPASVSSSSATSSADLILPILIYSVVRANPPHLVS
HLRFIHRFRSESLFRGQASYCATNFDAVVEWSQHVDLSTLGLSSAKVFAAAPSPSLSSSP
SQSRPRAQTTPSSILRARVSTTADQLVDSANSALSGVVDSSYRILFGPKGLTSSAPKSLD
DVKSVLDGARGKARGTLPFRRSSSARDFPTLLVGRRRGGSVASGKAVTIAGDGDEKGLAS
TSEEEVGVEKSEEMVDIVASSPSGTPAPRISTEESYAPPPPPLPPRCSSFASTTASKEKD
DSDTRSVRSVSSFLNFRESTLGRALGEVRDGVVGAAVGAASGDERGGSSPQPSLGGRLLN
RFSGGGPATSSSASQGSTTSPSSSRRSTLLNPLGGVHLSPWGAAVPSTSTATHSSTPLSP
VPASPLNSVILSAPAYQPVQRFLDVKDAGELRIGEVQELLEEYRRLVKHLQETASREGME
AKEEGEGKPTEEKAVQADSSVAPSGGEEA