Protein Info for mRNA_392 in Rhodosporidium toruloides IFO0880

Name: 8760
Annotation: K12834 PHF5A PHD finger-like domain-containing protein 5A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 111 PF03660: PHF5" amino acids 1 to 103 (103 residues), 165.9 bits, see alignment E=1.3e-53

Best Hits

Swiss-Prot: 72% identical to PHF5A_RAT: PHD finger-like domain-containing protein 5A (Phf5a) from Rattus norvegicus

KEGG orthology group: K12834, PHD finger-like domain-containing protein 5A (inferred from 78% identity to scm:SCHCODRAFT_13866)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (111 amino acids)

>mRNA_392 K12834 PHF5A PHD finger-like domain-containing protein 5A (Rhodosporidium toruloides IFO0880)
MSKHNTDLVMCRKQAGIAIGRTCEKCDGKCPICDSYVRPAEIVRICDECNFGTYGGRCIV
CGGNGISDAYYCAECVRLEKSRDGCPKIVNIGTSRTDAFYTRKAAGQFVKG