Protein Info for mRNA_395 in Rhodosporidium toruloides IFO0880

Name: 8763
Annotation: KOG2262 Sexual differentiation process protein ISP4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 740 transmembrane" amino acids 33 to 54 (22 residues), see Phobius details amino acids 60 to 79 (20 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details amino acids 137 to 160 (24 residues), see Phobius details amino acids 243 to 260 (18 residues), see Phobius details amino acids 266 to 288 (23 residues), see Phobius details amino acids 299 to 320 (22 residues), see Phobius details amino acids 344 to 366 (23 residues), see Phobius details amino acids 424 to 445 (22 residues), see Phobius details amino acids 451 to 471 (21 residues), see Phobius details amino acids 541 to 561 (21 residues), see Phobius details amino acids 567 to 584 (18 residues), see Phobius details amino acids 596 to 614 (19 residues), see Phobius details amino acids 644 to 671 (28 residues), see Phobius details amino acids 691 to 714 (24 residues), see Phobius details TIGR00728: oligopeptide transporter, OPT superfamily" amino acids 30 to 713 (684 residues), 316.5 bits, see alignment E=2e-98 PF03169: OPT" amino acids 31 to 714 (684 residues), 460.4 bits, see alignment E=5.9e-142

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (740 amino acids)

>mRNA_395 KOG2262 Sexual differentiation process protein ISP4 (Rhodosporidium toruloides IFO0880)
MAAALGRRSLDGLLSGRRGDEDARYMEEEPEFTLRAVLVGLAIGVLLACTNTYFGLQTGW
VSMMSLQASLLGFAVFKVLPNSPLFDRRPLTVHENIVLQTTAVATGTLPLAAGFVGIIPA
LAQLSPDLDGGAHPLILSWPALLAWSFAVAFFGVFLAVPLRRQVIVKEKLVFPSGTATAQ
VIGVLHNRPLISAVDENGQDGGLRRRRRALESMEDLAAEELEEELIGRQGGKAGAEQVVD
RKAWTALMTSFAVSSVYTLLSLALPFIYAIPVFDIFVTCAAHDWLWWFTPSFSYIGQGII
MGWETVLSMNIGMLFGWAFLSPLSKKMGWAPGPVSSSADGARGWVLWPALAVMTAESILS
VSLVAADSLRPWLERTAEKARHGSLLVRAESNGYDSDQDDESVDRVYLGRKEPSRADDEP
SMRVVLAGTAVSCVSCVVIVALVFGEDGIRWWATLIALLLASMFAVLGVRALGTTDLNPV
SAIGKISQLVFAVVQPGNVVANLVAGGIAEAGAQQAGDLMQDLKTGYLWGSSPRAQFHGQ
LIGSLASVFMSTGVYCLYRRVYTLPSTAFPVPAAAIWLNLARLVNTGNLPPRSKEAMLIF
GTVFVVLTALKAIGKVKLESSASDAVSESSRAKTWGWTRWIPSGIAFAVGFINTPSFSLA
RLVGGLISLYYTRKQVRTNGASSGASHLEHFGLIVVASGFVLGEGLASVVGLVLKSAGVG
GPATCWGCGVGGGGYCGGCP