Protein Info for mRNA_396 in Rhodosporidium toruloides IFO0880

Name: 8764
Annotation: K07478 ycaJ putative ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 685 PF05496: RuvB_N" amino acids 162 to 283 (122 residues), 45.8 bits, see alignment E=2e-15 PF07724: AAA_2" amino acids 191 to 279 (89 residues), 20.8 bits, see alignment E=1.3e-07 PF00004: AAA" amino acids 196 to 304 (109 residues), 54.5 bits, see alignment E=6.2e-18 PF07728: AAA_5" amino acids 196 to 288 (93 residues), 30.2 bits, see alignment E=1.5e-10 PF16193: AAA_assoc_2" amino acids 413 to 484 (72 residues), 79.4 bits, see alignment E=7.5e-26 PF12002: MgsA_C" amino acids 485 to 640 (156 residues), 197.7 bits, see alignment E=5e-62

Best Hits

Predicted SEED Role

"ATPase, AAA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (685 amino acids)

>mRNA_396 K07478 ycaJ putative ATPase (Rhodosporidium toruloides IFO0880)
MSTLGACTARPLPRNSLLTRSPHLIFDCPRSLCPPVECPVCERLVPESTVNIHLDFCCTS
SQVPSTSSSTATFPPAARRPSADGGSKKGSDGGSKKAPSVKKRKAVTEENPVTSSSPAAR
PPSSSFASTSASTAPPSVTKRPRISASTKSFLEAAKPLPELVRPRTLEDFVGQEHLLGQG
AMLRGLIEADRIGSCIFWGPPGTGKTTIARMIAKATSSVFKELSATNATTAQLREVFTEA
ENVLKLTGRKTLLFIDEIQRFNKAQQDAFLPVVEAGTLSLIASTTENPSFRVNTALLSRC
RVFVLQKLTQDNIYRILIRALRLLHEQRTGETLPVADARVKEADESNDEVVERETPDNAV
ADGGKAESGEGQAGEADATPLGDSVSAGPAPAAANTMDPPDVDPVFAFTGPVDPPLVRFL
AAAADGDARVALSSLELALSATRDTNGKISRDELKRSLRKAHLQYDRTGDAHYDTISALH
KAVRGSDANAALYWLARMLEGGDDPLYVARRLIRMASEDVGNANPSALPQAVAAYQATQL
IGMPECDCILAQVVVMLAESPKSVRTYKAYNAAKKLVKESENYPVPLHIRNAPTGLMKQL
GYGRDYRYEPGYAHPVYQPFLPPELAGTTFLKDDDSVEGKAYDEAALREWEWRNLGGKKW
EGREDMERKLAVEAEKESLVKQGGG