Protein Info for mRNA_399 in Rhodosporidium toruloides IFO0880

Name: 8767
Annotation: K06874 K06874 zinc finger protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 PF03367: zf-ZPR1" amino acids 38 to 222 (185 residues), 173.5 bits, see alignment E=1.6e-55 amino acids 273 to 429 (157 residues), 187.1 bits, see alignment E=1.1e-59 TIGR00310: ZPR1 zinc finger domain" amino acids 40 to 170 (131 residues), 84.5 bits, see alignment E=6.1e-28 amino acids 273 to 463 (191 residues), 167.8 bits, see alignment E=1.8e-53

Best Hits

KEGG orthology group: K06874, (no description) (inferred from 58% identity to lbc:LACBIDRAFT_157881)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (489 amino acids)

>mRNA_399 K06874 K06874 zinc finger protein (Rhodosporidium toruloides IFO0880)
MSSATAADQSQENQWKPIGAAAEETVGAGDVPVEVVESLCMQCHEQGETRMLLTVIPYFR
EVIVVSFRCEHCGYQNNEIQSAGEIQPLGAIYTVKCTSRDDLNRQLVKSESCTISIPDYQ
LTIPAGRGQLTTVEGVIADTIRDLEHDQPLRKIQHPDVYAKIEELVQKLRVIVPDQDAEA
EEGAEASSSGPVAAPSSAADSSAPMPTFTLKLDDPSGNSFVETRGGLADPKWSKREYERD
AAQDEALGLKHDEQQDKSTSHYPEEVLSFPGVCSLCGSELETLMKKVDIPHFKDIILMST
NCHDCGYRDTEVKSGGAIAEKGRRITLKVEDSDDLSRDILKSETAGLVIPEIDLELNPGT
LGGRFTTLEGLLQQVYEELDEKVFARGDSSESGVTDEMQKFLGNLKKAMAVEMPFTVILD
DPLSNSYIQNTWAPDVDPNLTEEDYERTFDQNDELGLNDIQTENYGHVEVPEEEAKEGEA
EKEKVVVQA