Protein Info for mRNA_400 in Rhodosporidium toruloides IFO0880

Name: 8768
Annotation: K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 879 transmembrane" amino acids 134 to 151 (18 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 198 to 216 (19 residues), see Phobius details amino acids 222 to 242 (21 residues), see Phobius details amino acids 263 to 280 (18 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details amino acids 317 to 342 (26 residues), see Phobius details amino acids 639 to 660 (22 residues), see Phobius details amino acids 679 to 697 (19 residues), see Phobius details amino acids 706 to 726 (21 residues), see Phobius details amino acids 734 to 752 (19 residues), see Phobius details PF02366: PMT" amino acids 95 to 343 (249 residues), 264.7 bits, see alignment E=1.3e-82 PF02815: MIR" amino acids 390 to 560 (171 residues), 127.1 bits, see alignment E=1.1e-40 PF16192: PMT_4TMC" amino acids 584 to 772 (189 residues), 205.1 bits, see alignment E=1.3e-64

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (879 amino acids)

>mRNA_400 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase (Rhodosporidium toruloides IFO0880)
MEPLRARRTLDRPTTPTRPSDTTPSSTAATQYPPDPYSAKVPLTNRPRKPSLSDRTGSPD
GKRARRDAPASLWSRVGGGLDVVQPGENRVLAGLILLGSVVRLWKIGRPSSVVFDEVHFG
GYIQSRFFMDVHPPLAKLLITLVAFVSGFKGGSFDFKDIGREYGPENVPYIAMRLLPATL
GLALIPLAYLTLRALQLRPATALLGSLFIMFENGLITQSRFILLDSPLIFFTALSVFFWV
GFSNENDVPRDRGGRVGPFSRRWWVWLTLTGLALGAVVSCKWVGLFTIATVGVYTIVQLW
NLLGDLRVPIPLLARHFLARAVCLIAVPVVFYISMFAIHFAVLSNSGEGDGFMSSEFQHT
LRGHGMEDTFADVMVGSRVTIRHVHTQGGYLHSHPSTYPGGSKQQQITLYPHRDDNNVWL
VLNATADTAAIPDPEHHAPPAPVPDHTTLVFHHPSTHKKLHSHDIRAPITEVDYQNEVSG
YGFEGFEGDANDHWVLEIDQAESESRVAKKQLETLRTKFRLRHLLTGCYLFSHKVKLPDW
GFEQQEVTCNKNPSRENALWYVETNTHPMLPADAKKVNYRRPSFLAKFLELQAVMWQTNQ
GLTDRHAYDSRPHSWPLLLRGINFWVKDHRQIYLIGNPFVWALSTIAVLSYVAIRGLLIL
RAQRGYKDFANSQVVFYERVATFLFSGWFLHYFPFFLMGRQLFLHHYFPALYFALLLVAT
SFDLATARLKPRLRLYVTGVLVFAAVGAWWYLSPLAYAGVWTRSQCESAKKLGRNWDFSC
ADFHEKASRSASGFRGTRADPSKFRRRLTTFASTEIRLLPSSRRRHDYRHVQRRRHFACS
RCPAWSSWLRAGRKGASFGRRRSSSSSAGREARRSGVGR