Protein Info for mRNA_414 in Rhodosporidium toruloides IFO0880

Name: 8782
Annotation: KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 PF02036: SCP2" amino acids 18 to 120 (103 residues), 87.3 bits, see alignment E=4.4e-29

Best Hits

Swiss-Prot: 43% identical to SCP2_YARLI: Fatty acid-binding protein (SCP2) from Yarrowia lipolytica (strain CLIB 122 / E 150)

KEGG orthology group: None (inferred from 60% identity to mgl:MGL_2981)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (126 amino acids)

>mRNA_414 KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes (Rhodosporidium toruloides IFO0880)
MSIADKEIPSTQLFDMIKQGLEGMDEKEKKDNMKKVNGIFEMRVKNSKGKEGIYTIDLKK
EGKVYQGNAKPKADVTISLADDTFQALADNKINGQKAFMSGKLKVKGNIMLATKLDQVLK
NAQSKL