Protein Info for mRNA_418 in Rhodosporidium toruloides IFO0880

Name: 8786
Annotation: KOG2308 Phosphatidic acid-preferring phospholipase A1, contains DDHD domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 928 transmembrane" amino acids 682 to 697 (16 residues), see Phobius details PF02862: DDHD" amino acids 676 to 908 (233 residues), 119 bits, see alignment E=1.9e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (928 amino acids)

>mRNA_418 KOG2308 Phosphatidic acid-preferring phospholipase A1, contains DDHD domain (Rhodosporidium toruloides IFO0880)
MDYFGLGAGRTDELHSLGSALLTPSEALGYLSPIETPSPRQHSPATAALAQQIQEAADLP
LATDEEKEKLPGAQGDASKQTLSPSQLNAVLKQDPLPPPPPQARFLHGGPPLSDLEAPSA
VLPQSERRNKPIANSEWRAFTDEEEERLHAGWERSQKDQEAKDRWAHSKEKGVVKEQEGM
KRAAEDEADPEDSPYLVPVGLDNLFTVSLFDNVLYPAFWSGSAVRVLLCHWFYAPPSSSL
SSPNQPSHLIKPYPVDPTLSASLDRAYSHIRPWDDSYAAELASALQGGAEAQKRLATPLG
VENEAGTEGNVGIEVIFEGKDRGRVYSKGMLGSMSKSLFSNGKGLGGGQVVLRGWDALKA
YIQEKAQKKAPTAKTAPDTTAAVTSDSDTEGSSARRRPRADSASTTGSVKRSESPGPGLF
ASLRHRIVGGPAPSADGAATAPPAAEVEGKLPNETQEAVQLREEEIGTADELVLVIHGIG
QSLAASYDSFNFLYAVNAFRSQCTSLSTAPALSPLLHGKRAQFIPVLWRAELDFDNIDNT
NDSADEHLANHFGVADIEIQNSVPFLRQVVSGLVLDVPFYLSPAHKEKMLRSVVKEANRI
YHLWVKRNPEFEQKGGKVSIIAHSLGSVMAADILSSQPTFVKQPELSVRTPGPRATPAMT
PGLKPLETAGKDGLTFAFDTRVLFLVGSPLAFFLHLGKGQLIARAGRERTKHVGRDIALE
RAGRYGCLAVDAVYNVYQETDPVAFLLAPTVDVRYAKLIKPVAIPSSNQTLLQNLSDAYH
RVSKIFDMSSLWGSSGATTTEDGKPKSGEEAKEQTVKQEQEKEKSAKPARRPSGPKRMPT
ERVKSGAGSAEYEWVSRAEKRMKALNASGTVDFYLPSEGISQYIDALTSHQNYWTDRRFS
TFVLSQLFADDAHIELTGREEVGVADEE