Protein Info for mRNA_419 in Rhodosporidium toruloides IFO0880

Name: 8787
Annotation: HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 transmembrane" amino acids 71 to 91 (21 residues), see Phobius details amino acids 98 to 121 (24 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 191 to 213 (23 residues), see Phobius details amino acids 220 to 239 (20 residues), see Phobius details amino acids 323 to 346 (24 residues), see Phobius details amino acids 368 to 386 (19 residues), see Phobius details amino acids 398 to 416 (19 residues), see Phobius details amino acids 422 to 445 (24 residues), see Phobius details amino acids 456 to 479 (24 residues), see Phobius details amino acids 485 to 505 (21 residues), see Phobius details PF07690: MFS_1" amino acids 73 to 363 (291 residues), 68 bits, see alignment E=3.9e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (513 amino acids)

>mRNA_419 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MNDIAEPLAAYAGLNKPVHKPASSSLPSPPPTPTRHLEQPDDTRSVSHSRLPVQQQSKKD
KWDGRIKEASCHISLLIAGWADASSGPLIPYIQAHYHISYTVVSMLFVGQAVGFAVAAFA
NSFLTQKLGLGKVIALGAVIQACAYTLLIPAFPFPVFPVIYAISGFGMALQDAQANVYIA
TLPGAETKLGYLHGSYGLGAAVVPLAATAFASSGILFSRFYAISLGLAALNAALLVYAFR
LNYIVDVNEPTETLEAPGVPPVTVVEGQDGIELVDQSRRDSTAATSVLEKAEEPSELEAG
RVEVRELDTRLQKRAKKSFKRGVLWQALTNRATLLTAIFILFYVGAEVSMGGWIVTFMID
KRNGGPDAGYTATGFWFGLMLGRVLLNPINVRVGEKRVLYGYTIIALALEFAVWFADSLV
GNAIVVAIIGVLIGPVYPVAISVLTKVIPRRLHATSIGFCASFGQIGAAVCPFATGALAG
RFSPAVLQPVMIVLFAIMLGLWTGVPGPARKKE