Protein Info for mRNA_432 in Rhodosporidium toruloides IFO0880

Name: 8800
Annotation: KOG4546 Peroxisomal biogenesis protein (peroxin 16)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 transmembrane" amino acids 296 to 311 (16 residues), see Phobius details amino acids 321 to 337 (17 residues), see Phobius details PF08610: Pex16" amino acids 8 to 421 (414 residues), 391.2 bits, see alignment E=1.9e-121

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (427 amino acids)

>mRNA_432 KOG4546 Peroxisomal biogenesis protein (peroxin 16) (Rhodosporidium toruloides IFO0880)
MTVSGALQHYEAGLVANASRIASIESTLRTLTWFLPGRFQDAEVASEGLYSVLNLISLYH
DSILHRAASSLPAPLRPPSSSHTRYTRHFTTHSKPYNLLAHSLSVVQSLELLLEMVARKK
KGREGAEKTVIAIEALKALLRLGLMGATQGRTGVQPPVAEREVDPALLELNRERLARVRR
AAQKDGSEATAAPKPQSAADVLLRQEHGRTDLELGMVQAEVEESEFWTGARTGYVRPTLA
SLRREGGDPADPLAQFGGGARTKDAGKEYLMSRVLTIEDVKRPQDLVAKAKGIKRLAEII
WILRPLIYVLAMRKYGRRHTLPYLLSLSLEYLAFSLRSTSTTRLASDKASGPMLPHATPS
ELERQETSKRGKMFWWYLLRGPVWESWTRPQLEGMARRFEDKPVIGFVATLLHDYVPLID
EYYYYTA