Protein Info for mRNA_439 in Rhodosporidium toruloides IFO0880

Name: 8807
Annotation: KOG2246 Galactosyltransferases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 578 transmembrane" amino acids 42 to 61 (20 residues), see Phobius details PF02434: Fringe" amino acids 274 to 355 (82 residues), 21.6 bits, see alignment E=1.3e-08 PF04646: DUF604" amino acids 335 to 498 (164 residues), 61.6 bits, see alignment E=8.1e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (578 amino acids)

>mRNA_439 KOG2246 Galactosyltransferases (Rhodosporidium toruloides IFO0880)
MVFLRQQPHSPWKSPHLPPSSLGFEPLIGGQKGGTALPRSRLTVLACAALGTFLLLSFVS
PFRPFSAFDDGHQPFKRKGMAPALFTELDKVDHRAVILRPVERSFERERSPEDPVSWSAT
PLLPARRQGKKRKPAILRLAGTEDASGDGGALVRHDADAAPIPSHKVEVFPRKIHLAPNS
NGVGAHVPTGDKLLFGIVTTTERATKMSELWTRWMVPRYPDDEAAPACLILVSEEETQED
IQELEEVLRQRQVQCGIRRGKHKRYEVRVLSMIREMKDHAAEVGLTPDWYIFNDDDTFWL
DMRATRRMLSKYDPAKEWFVGSTTEAEKQLAQFGRMLFGGGGALVSRALMSSMYDIWDEC
YDRFKDAFGGDEMLTRCAATATGLTKSTVTTEEKGLHQFDIPGDTTGVLQGGIPMLSLHH
FLGGGWVHLFGYGSTHSDMDQIRRIRTAADFLGGDNMFQRYVFGDGKWLLTMGYSVSFYE
KPLTREDMAAMEHTWYDGYRLCFDDRPFMPERHGPGPVKQTFYIESTEVISPKSALFTFI
QADSWDEHLSYDERVRLQVLWDGDSAHLTREQDPAALS