Protein Info for mRNA_442 in Rhodosporidium toruloides IFO0880

Name: 8810
Annotation: K11835 USP4_11_15, UBP12 ubiquitin carboxyl-terminal hydrolase 4/11/15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1438 PF06337: DUSP" amino acids 153 to 241 (89 residues), 49.7 bits, see alignment 6.9e-17 PF00443: UCH" amino acids 478 to 1253 (776 residues), 257.7 bits, see alignment E=2e-80 PF13423: UCH_1" amino acids 1086 to 1235 (150 residues), 33.7 bits, see alignment E=4.7e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1438 amino acids)

>mRNA_442 K11835 USP4_11_15, UBP12 ubiquitin carboxyl-terminal hydrolase 4/11/15 (Rhodosporidium toruloides IFO0880)
MLPGSNIPESLSPASSPSLASLTRKRPLSSPVSTASAPKRANSEDLMDQGASSDLEGSIG
ASRLNIASTPRSPTSASPASDKGDVDADETLTTPPEMDQDGSAEHMDETGDLPSADDDEL
PTYGASTSQYNGIAPDMQLEFVNEARKKRLEEGDSWYIVPRAWLRRWQAACSGVQESKDD
DASLTPEQVGPIDTTVLYDEKGDLRKPLTLGVDVEVVPGEAWGYLTSWYGLVGTSFERDV
VAPAGPGSETIEFYPPVFHLYLLVPTSSPPNASVTLPSLPTPPTVSYASSGVFSTLVEDA
ALAFELPRPVRLWRLPPISDELSAHEGAAYVFTDKLRETGVELLDPNQIDDDTTLQDALL
TDDETHLAVEQQNEDGTWMVDAEALMTALAAAETDAPPSEAAPPLPEEDKSATKKSGIGI
FSGGWSSGLHKPKTPGLGAGKEKEKEKPKGGNGGGILGAAMGALTRSKSTKQGQRGLVGL
QNLGNTCFMNSAIQCMSNTKELQEYFLSGVYHSELNRENPLGMRGQVAEAFGQLIERLWN
GTGSSVAPREFKQALARFAPQFSGYGQQDSQELLAFLLDGTHEDLNRIKKKPATEAPDWE
GGGDKEMVELAKTCWEQYRSRNDSVIVDLFQGQYRSTVVCPDCDKVSITFDPFMYVTTNL
PVTKKWSGRIIVVPLDAARGTLAVDLEVPKSGSIKTLKAAVGQLVDIDPKRLIITEEWHG
KFWKDWNDDESVTEIGGNDTIIMYETIAPHPQPRPRKPRPEQPANPAAPVILPVSHVKDN
SSGRMRFGTYSPDMWGTPFVVTLTPEQASSVAGIKRALARHYARVTKRGDELIEIVEEEI
AEDERLALAAGQTNSAEPSTINSSTTQSQSSTPPNESMDVDAPAAPTTASNDDAFVPTVV
GPAPPSTSNMSSLSSGASSLLAGPSTAPSTAPSTSTPARQRRIPFRVEVSKRAHPEGRIP
LDQHTTSDTVELAEYARVVQAVRAHKQASAPKPESEDIDMFSPKAERGEDSESADAQDKD
WEKVEKPQAEDAEVKPVPLLTTGHYVVAHWEPAAIDYFFNNETATWSIVQDIVDPAITAR
QQQGKGAKKVITLSDCLTEFTKEERLGEDDMWYCSRCKEFKQATKKVELWKVPDVLVFAL
KRFSSGRWSREKIDDLVDFPVLDGLDMEQFVQGDKVEQRLAQQMPDAPAISEPDSLVYDL
YAVSNHFGGLGGGHYTAFAKNPENGKWYDFDDSRVTEINPERVKSSAAYLLFYRRRTARP
IGGAKSRELVESANASRVASAAPSVAASEAAHSPFASRENLNASTSTEDFFGSFINKYGS
SSASRMADSSDDELPVPGSFHNFSSREPFARSSLHSSAFQLDTPTTDTDAPPSPPESVEP
GSPKDLSSLHGDDAWTKQTPPDLTDSEVVAVPPSAGQDDAQADEIKLPQGPSTLDTLE