Protein Info for mRNA_448 in Rhodosporidium toruloides IFO0880

Name: 8816
Annotation: K20221 IPO4, RANBP4 importin-4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1096 PF03810: IBN_N" amino acids 29 to 98 (70 residues), 25.6 bits, see alignment 2.9e-09 PF13513: HEAT_EZ" amino acids 372 to 424 (53 residues), 28.9 bits, see alignment 3.9e-10 PF02985: HEAT" amino acids 399 to 426 (28 residues), 23.3 bits, see alignment (E = 1.5e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1096 amino acids)

>mRNA_448 K20221 IPO4, RANBP4 importin-4 (Rhodosporidium toruloides IFO0880)
MADPAFTHSLFATLEQTIAPDTQVIKAATVQLNNHFYTDARCVPSLFEIGTSGANPAIRQ
LALVELRKRVSAKKNKQWLAQQQDVRNAIKSRLLDFLLTETNSQARAASTRLVSALAKLE
VEKGTWPELYPWLWNMASAPAASQREVALQTIFMVLDTISIAPTTAGGNATNQIPALLQL
LSKTVADPESLVVKVWSIKALGKLSEFLEEGEDAEISTVQGLIPAVVQVLQQALDNSDES
STKSIFEFIEQITLSEVPIFNPHITNFVTFLLQASANQAYDADLRVMCLNSLFWIVKFKK
SKVQQLNLAPQILTGLLPIGAEPEPTDAEDEVASRVAFRVIDVLATSLPPSHVFPPLFEQ
VRTLAASPDAGLRKSAITAFGVVVEGCSLYIQPHLDNLWPLIINGLQDPEVVVRKAACTA
LGCLCEMLEEECAKQHALLLPLISKLMSDPATQRPACIALDCLLEVLGSDIEPYIPSLME
ALVGMLDSAPLALKSTVVGAIGSAAHASKTKFAPYFDATMQRLVQFLQLTEEGEELDLRG
VAQDTVGTLAEAVGAEQFRPYYAPLMQHAIAAVGIEHASNLKECSSIFFAVVSRVYKEEF
AQYLPIIMPILLASVGQEEIDDEALLGGNASTDFTTGVDDDDDDPDFEDLDEDIDSDEED
AFFKASTQIAIEKECASDALAEIFDNVGKPFLPYLEPCVKALVAGVDHHWHDGIRKSSMA
ALLGFIATLNRLVEPPKWTKGSSGNQLNPDVAQLVQLVMPKIMDAWAEEDELSVVNELCN
SLSAALMAVGPALIVPDYVQPICEQVSAILQRKAKCQIGDDEDEVEAGEHEQSEYDAALV
GAACDLVGSLASSLGADFAQLFSAFMPSMIAYYDPARSTADRSTAIGSLAEIVNGMEGAS
TAFSDTLFPLFLQALADPEPEVQSNAAFATGSLLLHTTGDLSPHYLTVLQALHPLLGLPE
DGAAKHENAKDNACGAIARMIVKNASAVPLDQVVPVLVQSLPLRRDYAESSHVFDALLLL
LREQNPQVLANLDHVLSVFAKALASTKKEDGSDVFYPNGDAQISQENKQRIVELVKALAA
SQPEKVQQAGLAPYLA