Protein Info for mRNA_469 in Rhodosporidium toruloides IFO0880

Name: 8837
Annotation: KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1534 transmembrane" amino acids 181 to 213 (33 residues), see Phobius details amino acids 715 to 738 (24 residues), see Phobius details PF00168: C2" amino acids 455 to 550 (96 residues), 51.2 bits, see alignment 7e-18 amino acids 600 to 698 (99 residues), 50.6 bits, see alignment 1.1e-17 amino acids 733 to 827 (95 residues), 49.7 bits, see alignment 2e-17 amino acids 1093 to 1193 (101 residues), 81.3 bits, see alignment 3e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1534 amino acids)

>mRNA_469 KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain (Rhodosporidium toruloides IFO0880)
MLVPPQGANVHSFDPSASPAEKAAQARKAASAVTPVDMSAAPSLRKGELGQFTKDGGSSV
SSDVGTKGEKIEVTTGAKAAEVESTKEKENGKPLNDAERAKQIEQDEGRVDENGVKSPPG
AMPNKEAEKGKPREIPSWFAIGWNGQDKSFFLSPEDARERSILSDFFTDAYYGQWYHNAG
IIVFAVISTHFVTLFGGGWGWMIVILAVCTTYYETSIKRVRRNVRDDMAREVAKKGLKTE
VESAAWINSFLQRFWLIYEPILSATIVASVDQVLSVSTPAFLDSLRLTTFTLGTKPPHID
HVRTFPDTDEDVVVMEWAVSFTPNDLADMTHAAAAKKVNPKVVLEIRIGKGIASIGKDII
VEDISFKGVMRIKLKLMNNYPHVKTVDLSFMQPPDFDFVLRPVGFDLNSVFPGLYSFIKS
TVDSSIGPMLYDPNTFTLDLEQMLSGAPIDTAVGVLAVTIHSGKGLKGTKIGAGAPDPYV
SISISNRAELAKTKIKRNTSTPHWQETHFVLLNTLNDALTMKVFDYNDHRPDSDLGTVSF
DLKSLADDGEQPDLIGEVILDGKTRGQVRYDLKYYPVLKPTKLADGTLEPVPETTAGVAR
LVVHQAKDLDPKGEQINPFNVLSLNNQRVHRSQTLKRTANPVWEKAHEMLVTAKDSAVIG
VEVVDDNSIRSDTKLGFCKVRLVDILEANSKGNDWFPLSNARSGKVRITAEWKPVLMAGA
INGAGAYTAPLGVVRFWFKRSRDLKNVEAFTGGKSDPYARILSKGLVVARTMVHDNNLDP
EYDEIVYVQVHSPRDSFVIEVMDYNHNTKDRTLGQTEFSVSGILAEGPDKRNKPWVGTGK
VSKTEMLKSDNKRTVKGNIEFEAEFFPCTPLKNVSFTPPDEMPSQARITEVDEDESGANE
ETIEPEGDDKAAVSTPTTASFASPPTSPSKPNGPGSNGGAKEEDEGLTIPRDQLLRTQTG
VLAFQVISGSLSRKGARLEVLMDGGYWPCFSTERSRSAHNTWDEIGEVLIRELDFSTITL
ALNDAEKDTREDILAKVQVDMNDFLENTLDKPYTFTLLPTEGHSSRSTVTIMSKYIPVDM
QILPRESVNNSGVIRVDVLDAKGLPSADRNGKSDPYAIFELNDERVHKTEVVKKTLAPVW
NEKFEMQVPSREAAKFIVEVHDWDRVGASDKLGRAQIDLRDIEPFEPAERTVQLYDFKNT
SQTAGTIRIRMVFQPGFIYRSRKATSTFSAGRIGTTLGGGAMAVGGGIVGAGGAVGKAGV
GAVGTVGKAGIHGVGTVGKVGVQGVGAVGKGVGAVGKGVFGLGRRGTKEGVAASPSMAEL
ADADAAAAAGYSVPSADGVEVLATDTAPFPTSAGGAVVGAAGTLTVTVGDLSGGADASEK
KAVIVKLGSKTVLETHSHKSADGKVTYGETAAVKTPADGETELGFAVVHKKTFGGDKVFS
SAVLPVWQHISPTAPATTVTLPLSGSHPGELVVSLSWIPVPAFLNSGSRAPSEADVRSLA
DSTAGGSPAGKTRSRFSSGRFGRHKDRETTPVVE