Protein Info for mRNA_475 in Rhodosporidium toruloides IFO0880

Name: 8843
Annotation: K15153 MED31, SOH1 mediator of RNA polymerase II transcription subunit 31

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 PF05669: Med31" amino acids 101 to 195 (95 residues), 107 bits, see alignment E=4e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (284 amino acids)

>mRNA_475 K15153 MED31, SOH1 mediator of RNA polymerase II transcription subunit 31 (Rhodosporidium toruloides IFO0880)
MYSTLGYLSRKASFKQINPNFPVTQAIQGADPEEVFEANRKELVHDFLLKAKQLELLISS
LPSTPPGPTSPEGEGNDAEEFEELEREAAHPTDQQRLANKIRFETELEFVSCLANPFYLQ
SLAQQGLFDSEPFLNYLTYLLYFRQPTYSRFLQYPQSLHHLTLLTSSSSFRKAMKEQPLL
AQEWAGKMVAHWAGWREREGLGEAVGGLKGEGGKKEDGAGAGEAAAAGGAAERNGGDETK
QAAAASSAFAAARRSTRRTADLETKEAAKETSALGGGDGWNEQV